Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00550 ATGACTCTCCCTTCTCACGATGCTTGGATTCACACTTGCCACACCCTCCTACCCACATGGAAATCCCTTTCCCTCTCTCATCAGTCAACAATCCCAATTTCAATATCAAGAGTTAACCAAGTTGATGCTGCGCGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAGCAATTGGTTAAAGTGTTCTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCGGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGCGGTTCTCAATTTGGGTGTTAAATTGTAGTATTATACAATTTTGTGACGTATTTCCATGCCTTAAACAAACCCATAACCAAGAGGGAAAGTGTACAATTTTTCTGATGATCTTTAGAACTGGTTTGGAGGGACCTGGACTCACTGTTGCGCAGAAACTTTGGTATTGTGTTGCCACGGTTGGTGGTCAGTATATATGGGCTCGCTTGCAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCACGACGATTATGGATCTTGATACAACGAATAGAAGGAGTTTATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACGGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTCTCGGAAATGTTACTATTGCTTCTTCCTCTTCTTAATTCATCATCCGTGAAAAATCTCCTTCGACCTTTCTCAAAAGATAAATCATCAAGTTCATCCGAGGATGGCACAGCATGTCCCATTTGCCTGGCCACTCCAACCATACCTTTTGTTGCTCTACCTTGTCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCATTTAGGTGTTCCAGGTGCAGTGAGCCAGTTGTTGCTATGCAACGGCATGGTGGTGTCCCCACGGAATGA 1008 0.4256 MTLPSHDAWIHTCHTLLPTWKSLSLSHQSTIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVLNCSIIQFCDVFPCLKQTHNQEGKCTIFLMIFRTGLEGPGLTVAQKLWYCVATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGVYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSSSSSEDGTACPICLATPTIPFVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHGGVPTE* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00550 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 332 IPR013083 -
Lapu10g00550 335 Pfam Pex2 / Pex12 amino terminal region 47 257 IPR006845 -
Lapu10g00550 335 CDD RING-HC_PEX2 277 323 IPR045859 -
Lapu10g00550 335 ProSitePatterns Zinc finger RING-type signature. 295 304 IPR017907 -
Lapu10g00550 335 ProSiteProfiles Zinc finger RING-type profile. 279 320 IPR001841 -
Lapu10g00550 335 SUPERFAMILY RING/U-box 274 325 - -
Lapu10g00550 335 PANTHER PEROXISOME BIOGENESIS FACTOR 2 3 332 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Lapu10g00550 335 SMART ring_2 279 319 IPR001841 -
Lapu10g00550 335 Pfam Zinc finger, C3HC4 type (RING finger) 279 319 IPR018957 GO:0046872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00550 K06664 - gmx:100805856 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00550 10 7799088 7804293 Lapu10g00550 10 7799088 7804293 ECH