Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00525 ATGGGGAGCTCTGAAGGGGTGGGAGCATCGATGAAGCAACATGGTATCACAAAGCCCATTTCTATGGCTGGACCAACTGTTTATGATTTTCAAAGGTCTCTTGAGTTAGAAAAGTTTCTCGCTGTTTCGGGACTTTATGAGAACAAAGAGGAAGCTGCTAAGAGAGAAGAGGTTCTTCACCGACTTGAACAGATAGTAAAAAATTGGGTGAAGCAACTTACTCGCTTAAAGGGATACACGGGTCAAATGGTGGAAGATGCAAATGCTATCATTTTGACTTTTGGTTCTTATAGGCTTGGTGTTCATGGTCCTGGGGCTGACTTAGACACAATATGCATTGGACCTTCCTACGTGAATCGGGAGGAAGATTTTTTCTACACATTGCATGATATCCTAGCTAACATGGAGGAGGTCTCTGAATTGCAACCAATTCCGGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTTTATGCCAGTATTTCTTGTTTGATTGTACCCGAAGACTTGGTTATATCTGATGTCTCTCTTCTACACAATGTTGACGAGCCTACTGTGCGAAGTTTGAATGGCTGTAGAGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATGTTGAGCACTTTCGCACAACACTTCGTTGCTTGAAATTTTGGGCCAAAAGGCGAGGCATTTATTCCAATGTGACAGGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTGTGCCAGTTGTATCCAAATGCAGTTCCAAGTATGCTTGTCTCTCGATTCTTTAGGGTATATACACAGTGGCGGTGGCCAACACCTGTCATGTTATGTCCAATTGAGGAAAATGAACTTGGTTTTTCTGTTTGGCATCCTCGTAAAAATCCTCGTGACAGATCCCATCTCATGCCAATTATTACTCCTGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTACAAGCACACTTCGTGTTATGATGGAGCAGTTCCAATTTGGCAACAAGATATGTGGGGATGTAGAACTGAATAAAGGTTGTTGGAAGGATCTGTTTGAACCATACGTTTTTTTTGAAAGTTATACAAACTACTTGCAAGTTGATGTAGTTGCTGCTGATGTTGATGACCTGCGCAATTGGAAAGGTTGGGTGGGATCACGCCTTCGGCAGTTGACCCTGATGATTGAGCGTGACACTTTTGGGAAGTTGCAGTGCCATCCTTATCATCACGAGTATATGGATACCTCAAGGCAGAGTGCACATTGTGCTTTCTTTGTGGGTTTGCAGAGGAAGCAGGGAGAGATAGTTCAAGAAGGCCAGCAATTTGATATACGCGGAACAATTGAAGAATTTTTGCATTCGGTTAATTTGTATATGTTCTGGAAACCAGAGATGGAGATTTATGTTTCTCATGTTCGTAGAAGGCAAATTCCATGCTATGTGTTTCCTGATGGTCATAAAAGATTGCGACCATCAAGGCCAACATCAAAATTTGAGAATCATAAATCATTTCATAAAAATCAGGTTTCTGGGAGTGAACATGTTGAGAGAATTCGTAAGAGGAAGAACAATGATGGTTTGAGTGTGAGGGAGGATGCTACACTGAAAAAACAATGTACTAGTCCTCCTCAAGGTAAATGGGCAAGTCGCAGCAGCATTGCTACTAGTGGTTTCTCTGTTGATGTTGTATCTGATAGTCAACAGTTGAGAAATGTGGAGTGCAATCATTTGTCAAACAGTGGGCAAGAGTTGGATAGAACAGAATCTCCTGAACCTGCCTCTAATTCTAGTGGGATTGCTTCCGTTACAAGTGATAGTGGTTCTTCTGAAGATATTAGAGCTGTATCTGTGGCAGGTTGTGTTGAAGATAGCACCGGGGGTGTAGATATGATGAACAACAATGGCATATTTGAGAGTAGTACTTATGGAAACAATTCTCTCACTCTGGTGAAAAACAGAGTGACAAATGGTGATGAAGTATTTCAACACAAGCGACAGGAGCAGTTGCAGGTTTTGGATTTCAATTCCTTCCCGAATATTTGTTTCTTTGTTACTCTTTCTTATTACCGTCTTGATATATTCTTTTGTGTGGTTAGTTCAGTACTTTTAGTCATTCTTATTTTCCTCATTTTACTGTAA 2154 0.409 MGSSEGVGASMKQHGITKPISMAGPTVYDFQRSLELEKFLAVSGLYENKEEAAKREEVLHRLEQIVKNWVKQLTRLKGYTGQMVEDANAIILTFGSYRLGVHGPGADLDTICIGPSYVNREEDFFYTLHDILANMEEVSELQPIPDAHVPVMKFKFDGISIDLLYASISCLIVPEDLVISDVSLLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENELGFSVWHPRKNPRDRSHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNKICGDVELNKGCWKDLFEPYVFFESYTNYLQVDVVAADVDDLRNWKGWVGSRLRQLTLMIERDTFGKLQCHPYHHEYMDTSRQSAHCAFFVGLQRKQGEIVQEGQQFDIRGTIEEFLHSVNLYMFWKPEMEIYVSHVRRRQIPCYVFPDGHKRLRPSRPTSKFENHKSFHKNQVSGSEHVERIRKRKNNDGLSVREDATLKKQCTSPPQGKWASRSSIATSGFSVDVVSDSQQLRNVECNHLSNSGQELDRTESPEPASNSSGIASVTSDSGSSEDIRAVSVAGCVEDSTGGVDMMNNNGIFESSTYGNNSLTLVKNRVTNGDEVFQHKRQEQLQVLDFNSFPNICFFVTLSYYRLDIFFCVVSSVLLVILIFLILL* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00525 717 CDD NT_PAP_TUTase 54 209 - -
Lapu10g00525 717 MobiDBLite consensus disorder prediction 495 555 - -
Lapu10g00525 717 SUPERFAMILY Nucleotidyltransferase 15 208 IPR043519 -
Lapu10g00525 717 Gene3D Poly(A) polymerase predicted RNA binding domain 361 477 - -
Lapu10g00525 717 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Lapu10g00525 717 FunFam Putative poly(A) polymerase gamma 190 357 - -
Lapu10g00525 717 Pfam Nucleotidyltransferase domain 89 163 IPR002934 GO:0016779
Lapu10g00525 717 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Lapu10g00525 717 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lapu10g00525 717 PANTHER POLY A POLYMERASE 10 530 - -
Lapu10g00525 717 MobiDBLite consensus disorder prediction 539 555 - -
Lapu10g00525 717 FunFam Poly(A) polymerase alpha, putative 47 203 - -
Lapu10g00525 717 MobiDBLite consensus disorder prediction 582 615 - -
Lapu10g00525 717 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0043631|GO:1990817
Lapu10g00525 717 Pfam Poly(A) polymerase predicted RNA binding domain 362 422 IPR007010 GO:0003723|GO:0043631
Lapu10g00525 717 Gene3D - 15 357 - -
Lapu10g00525 717 FunFam Nuclear poly(A) polymerase 4 361 477 - -
Lapu10g00525 717 MobiDBLite consensus disorder prediction 495 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00525 Lapu-Chr10 7571482 7576828 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00525 K14376 - gmx:100783237 1140.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00525 10 7571482 7576828 Lapu10g00525 10 7571482 7576828 ECH