Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00479 ATGGAGCTCCCAGAAACGCGTGCTTCGCTGAGATCGAGCTTCACGTTTGGAGAGACGCTGTGTGCGGTGTTCATTCCGTTCATAGGAATTGTCGAAGCTGTGGTTTTCAGCTTAACTGGTTGCTTCGATTTCTGTTCTCCGGCGAAGAAGAAACCTTCTTCTGCTACCTTCCACGACATTGTCGCACTCGCCAAGGACTCTCCGTTTACCGTTAATGAAATTGAGGCTTTGCACGAATTGTTCAAGAAGTTGAGTAGCTCAATCATTGACGATGGCCTCATCCACAAGGAAGAACTCACATTGGCACTGTTGAAGACCACGACTAGGGAGAATCTTTTCCTTGACAGGGTGTTTGATGTTTTCGATGAAAAAAGAAATGGTGTTATAGAATTTGACGAGTTTGTGCATGCTCTCAATATCTTTCATCCTTGTACTCCTGTGGATAAGAAAATTGACTTTGCTTTTAGATTGTATGACTTGAGACACACTGGATATATTGAGCGAGAAGAAGTTAGGCAAATGGTTGTCGCCATTCTGTCAGAATGTGGCATGGATCTAGAAGATGAAGTCCTTGAAACCATTATTGATAATACATTTCAAGAAGCCGATACTGATAAAGATGATAAAATAAGCAAGGAAGAATGGAAGGCATTTGTCAATCGACACCCAACACTCTTGAAGCACATGACTCTTCCTCATCTGAAGGACATCAGCACACTGTTTACCAGTTTCATTTTCAACACCGAAGTTGATGATTCTCACTGGCACATTAATGGCAATCATAAACACTGA 792 0.4217 MELPETRASLRSSFTFGETLCAVFIPFIGIVEAVVFSLTGCFDFCSPAKKKPSSATFHDIVALAKDSPFTVNEIEALHELFKKLSSSIIDDGLIHKEELTLALLKTTTRENLFLDRVFDVFDEKRNGVIEFDEFVHALNIFHPCTPVDKKIDFAFRLYDLRHTGYIEREEVRQMVVAILSECGMDLEDEVLETIIDNTFQEADTDKDDKISKEEWKAFVNRHPTLLKHMTLPHLKDISTLFTSFIFNTEVDDSHWHINGNHKH* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00479 263 Gene3D - 60 253 - -
Lapu10g00479 263 ProSiteProfiles EF-hand calcium-binding domain profile. 190 225 IPR002048 GO:0005509
Lapu10g00479 263 PANTHER CALCINEURIN B 40 253 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lapu10g00479 263 SMART efh_1 113 141 IPR002048 GO:0005509
Lapu10g00479 263 SMART efh_1 194 222 IPR002048 GO:0005509
Lapu10g00479 263 SMART efh_1 150 178 IPR002048 GO:0005509
Lapu10g00479 263 CDD EFh 114 175 IPR002048 GO:0005509
Lapu10g00479 263 PRINTS Recoverin family signature 117 138 - -
Lapu10g00479 263 PRINTS Recoverin family signature 164 182 - -
Lapu10g00479 263 PRINTS Recoverin family signature 210 230 - -
Lapu10g00479 263 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Lapu10g00479 263 FunFam calcineurin B-like protein 3 59 252 - -
Lapu10g00479 263 ProSitePatterns EF-hand calcium-binding domain. 203 215 IPR018247 -
Lapu10g00479 263 CDD EFh 150 219 IPR002048 GO:0005509
Lapu10g00479 263 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Lapu10g00479 263 Pfam EF-hand domain pair 149 218 IPR002048 GO:0005509
Lapu10g00479 263 Pfam EF-hand domain pair 91 137 IPR002048 GO:0005509
Lapu10g00479 263 SUPERFAMILY EF-hand 63 243 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00479 Lapu-Chr10 7158122 7162219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00479 37 253 EF-hand Containing Proteins AT5G55990 57.604 3.36e-87 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00479 K06268 - gmx:100801943 452.981