Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00469 ATGAGGAGTTTTTCAGAACACAAACAAAGAAAAGGAAAAAAGCTTAAACCCTCTGCAAAGCCCTACTTCTTCTTCTGGTTGCCATTTCTGATTTCATTTCCAAATCAATTGTTGCTGCAAACTGCAATTGCAATGTATCGATTAGCTCGTAGAGTAGCTTCTTCCTCCATTGCTTCTCCCTCCACAAAGAACCTTGTATATGGTAGGGTGTTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAACTTTGGGGTTGGGGCTCGTGCTGCAATCCTCCAAGGTGTAACTCAGGTTGCTGATGCTGTGAAAGTAACCATGGGACCCAAGGGTCGCAATGTGATAATTGAGAGAAGCCGTGGGAATCCCAGGATCACCAAGGATGGTGTGACTGTGGCTAAAAGTATCAAATTTAAAGATAAAGCCAAAAATGTTGGTGCGGATCTTGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGACGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCAATTGCTGCTGGTGTAAATGTTATGGATTTACGTAATGGAATAAATAAGGCAGTTGATGCTGTAATTACTGACTTGAAAAGCAGAGCATTGATGATAAGTACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCAAATGGGGAGCGTGATATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAGGGAGTCATTACTGTTGTTGATGGGAATACTTTGGATAATGAGTTGGAAGTGGTCGAAGGAATGAAGTTAACCAGAGGGTACATATCTCCTTATTTTATTACTGACCAGAAGACTCGTAAATGTGAATTGGATAACCCCTTTATTCTCATCCATGACAAGAAAATTTCAGACATGAATTTATTGCTGAAAATACTGGAGCTGGCAGTAACGAAAAAAAGACCACTCCTAGTTGTTGCTGAAGATGTAGAGAGTGATGCATTGGCTATGCTCATACTCAACAAGCATCACGCTGGGCTTAAGGTCTGTGCTGTAAAAGCTCCTGGTTTTGGTGATAGTAGAAGGGCAAATCTAGATGATCTTGCAACTCTTACTGGAGGAGAGGTCATCACTGAAGAGCGTGGTTTGTCTCTTGATAAAGTCCAACCAGAAATGCTTGGCACTGCAAGAAAGGTTACTGTCACCATTGATGACACTATTATTCTACATGGTGGTGGGGATAAGAAGGCCATTGAAGAGAGATGTGAACAGCTGAGGACGGCTATGGAAAATAGTTCTGCCATGTTTGATAAAGAAAAAACACAGGAACGCCTATCAAAACTATCTGGCGGTGTAGCTGTTTTCAAAGTTGGAGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCAGGTGGTGGAGTCGCTCTCTTGTATGCTACCAAAGCCTTGGATAACCTTCAAACTCAAAATGAAGATGAAAAAAGAGGAGTACAGATTATTCAGAATGCACTCAAGGCGCCTACGTGTACCATAGCTTCAAATGCTGGTTTTGATGGTGCTTTGGTCCACAGCAAATTGTTGGAACAAGATGATCATAATTTAGGTTTTGATGCCGCTAAAGGTATCTATGTTGATATGGTGAAGGCTGGAATAATAGATCCTCTCAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATCCACATGACAAAAATAAACCTCCTAGTCGGGTGCCAGATATGGATGATTTGGACCTCTAA 1860 0.4247 MRSFSEHKQRKGKKLKPSAKPYFFFWLPFLISFPNQLLLQTAIAMYRLARRVASSSIASPSTKNLVYGRVLSSRNFVSKDINFGVGARAAILQGVTQVADAVKVTMGPKGRNVIIERSRGNPRITKDGVTVAKSIKFKDKAKNVGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRNGINKAVDAVITDLKSRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVVDGNTLDNELEVVEGMKLTRGYISPYFITDQKTRKCELDNPFILIHDKKISDMNLLLKILELAVTKKRPLLVVAEDVESDALAMLILNKHHAGLKVCAVKAPGFGDSRRANLDDLATLTGGEVITEERGLSLDKVQPEMLGTARKVTVTIDDTIILHGGGDKKAIEERCEQLRTAMENSSAMFDKEKTQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALDNLQTQNEDEKRGVQIIQNALKAPTCTIASNAGFDGALVHSKLLEQDDHNLGFDAAKGIYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDNPHDKNKPPSRVPDMDDLDL* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00469 619 FunFam 60 kDa chaperonin 267 448 - -
Lapu10g00469 619 NCBIfam chaperonin GroEL 78 602 IPR001844 GO:0042026|GO:0140662
Lapu10g00469 619 Hamap Chaperonin GroEL [groEL]. 77 617 IPR001844 GO:0042026|GO:0140662
Lapu10g00469 619 ProSitePatterns Chaperonins cpn60 signature. 480 491 IPR018370 GO:0005524|GO:0006457
Lapu10g00469 619 Pfam TCP-1/cpn60 chaperonin family 98 599 IPR002423 GO:0005524
Lapu10g00469 619 CDD GroEL 79 599 IPR001844 GO:0042026|GO:0140662
Lapu10g00469 619 PRINTS 60kDa chaperonin signature 343 366 IPR001844 GO:0042026|GO:0140662
Lapu10g00469 619 PRINTS 60kDa chaperonin signature 425 450 IPR001844 GO:0042026|GO:0140662
Lapu10g00469 619 PRINTS 60kDa chaperonin signature 158 185 IPR001844 GO:0042026|GO:0140662
Lapu10g00469 619 PRINTS 60kDa chaperonin signature 473 494 IPR001844 GO:0042026|GO:0140662
Lapu10g00469 619 PRINTS 60kDa chaperonin signature 102 128 IPR001844 GO:0042026|GO:0140662
Lapu10g00469 619 Gene3D - 81 598 IPR027413 -
Lapu10g00469 619 Coils Coil 414 434 - -
Lapu10g00469 619 Coils Coil 501 521 - -
Lapu10g00469 619 Gene3D GroEL 267 448 IPR027409 -
Lapu10g00469 619 SUPERFAMILY GroEL-intermediate domain like 213 279 IPR027410 -
Lapu10g00469 619 SUPERFAMILY GroEL apical domain-like 259 451 IPR027409 -
Lapu10g00469 619 Gene3D - 212 485 IPR027410 -
Lapu10g00469 619 SUPERFAMILY GroEL equatorial domain-like 82 597 IPR027413 -
Lapu10g00469 619 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 77 608 IPR001844 GO:0042026|GO:0140662
Lapu10g00469 619 MobiDBLite consensus disorder prediction 599 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00469 Lapu-Chr10 7054840 7061603 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00469 K04077 - gmx:100778935 1047.73