Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00439 ATGAGTTCGAGGGTGGTGAAGGGGAGGGTGGTGTTAATACAGAAGGATGTAGTTAAAACCCTAAGCAACGTCAAGGAGCTTGCAAGCACTGGCGTCAAGCTAATTGGCTCATCAGTCGAATACGATATCACTAAATCTGTGATTTTCAAGTTGATTAGTCGAACCAAATCATCCAGCCATTGCTATGACGTGGCTGGGAAAGTTGGAAAGGAGACCTATTTAGAGAACAACGTTTCTGTGTCACGAAGATTGGGAGAGAGAGAGGAGGAATACGATATTTATTTTGAATGGGATGATACTGAGATGGGAATTCCAGGAGCATTTTACGTTAAAAACCTGATGAATGATGAGTTCTTTCTTGTTAGTATGAGTCTTGAATATCCAGTTCCAGCTTGTGACAGGGACAAGGACAAAAACAAGATTCACTTTGTGTGTAACTCGTGGGTTCACAATCATAAGTGTTACAAAACAGATCGCATCTTCTTTGACAACATTCCATATCTTCCTGGTAGTGAGACACCAGAGACACTACGAAAGTACAGAGAAGAAGAGTTGAAGAATTTAAGGGGAGATGGAACAGGAAAGCGTGAGCAATGGGATAGGATTTATGATTATGATGTCTATAATGATTTGGGCTTCCTAGACAGCGATGGAAATCAGGATCACCCAATTCTTGGAGGGCCCCACTATCCCTACCCTCGTAGGGTTAGGTCTGGTAGAAAAGTCATTCACAATGCTAATAATGGTGGTGAATACGAGAAACAAGGCAATTATTATTATGTGCCAAGGGATGAAAATTTCAGTCATGTGAAGACATCAGATTTCCTTGATTTTGGAACGAAAACTCTATCTGAAAGTGTGGAACCCTTGCTCCTATCTTTATATTTGAAGGTTACATCGAACGAGTTTAATGGCTTTGAAGAAGTGCAGAAACTGTACGAAGGTGGTATTGGTCTGCCTATATCTATCACTGGGAACGGTACTCAAAATGTTCTTCGCTTTCCACCACCTCAAGTAATCCAAGAAAGCAAGTTTGCATGGATGAGTGATGAAGAGTTTGCAAGACAGATGATTGCTGGTGTAAACCCTTGTGTAATTGGCCTTCTTAAAAGAGAGGAGCTCGCACCGCGAAGCAAGCTGGACTGCCACTGTAAGCAAAGTAGTACGATAACAAAAGAACAGTTGGAGATTAACATGGGTGGAGTCACAGTAGAAGAGGCATTTGGTTGTAAGAGATTATTCGTATTAGATTACCATGACGCTTTCATGCCATATTTGAGGAAGATAAACGACCTTCCTTCTGCAAAGGCTTATGCAACCAGAACATTCTTGTTCTTGAAAGATGATGGGACTTTGAAGCCACTTGCAATTGAATTAAGCAAGCCACATCAATGTCGTATAGCGGTGTTGCCTAAGCCAATCATCGATGTCCAGCCACATCCAGATGGAAATTATCATTTAGGTGTCGAGAGCAAAGTGGTGTTTCCAGCAGAAAAAGGTGTTGAAAGTACAATTTGGCTATTGGCTAAGGCTCATGTTATTGTAAATGACACCAACTATCATCAGCTCATAAGCCACTGGTTACATACTCATGCTGTGATGGAGCCATTTGCCATAGCTACACACAGAAATCTCAGTGTGCTTCACCCCATTTATAAACTTCTTCATCCTCACTACCGTGACACCATAAATATCAATGCACTTGCTAGACAATCTCTGATTAATGCAGGTAGCATTATAGAGCAAACGTTTTTGCCTGGACCTTATTCTATGGAGATGTCTTCAGCTGTATACAAAAATTGGGTTTTCACTGACCAAGCATTACCGAACGATCTCATCAAGAGAGGATTGGCAGTTAAGGATCACTCTGCCCCTCATGGCCTTCGCCTTGTGATAGAGGACTATCCTTATGCTGTTGATGGACTAGAAATATGGGATGCTATTAAGACATGGGTCCAAGAGTATGTCTCCTTGTATTACTCAGCAGATGTGGCAGTTCAACGAGATACTGAATTGCAAGCATGGTGGAAGGAAGTTGTGGAGAAGGGTCATGGTGACATAAAAGATGCACAATGGCCTAAAATGCAGACTTGTCAAGGGCTGGTTGACACTTGCACTATTATTATATGGATTGCTTCAGCTCTCCATGCTGCTGTTAATTTTGGACAGTATCCTTATGGAGGTTATATCCTGAACCGTCCAACACAAAGCCGAAGATGGATCCCTGAACCAGGAAGTCAAGAGTATGATGAGATGATCAAGAATCCTCAGGAAGCTTTTTTGAGAACAATTACTCCAAAGTACCAAACCGTTATTGATCTTACAGTGATGGAGATATTGTCAAGACATAGTTCTGATGAGGTATACCTTGGACAGAGGGACAATCCAAATTGGACCTCTGATCAGAATGCAAAAGATGTGTTCGGAACATTTACAAAAACACTAGGAATGATTGAGACAAAAATCTCACAAAGGAACCACAACCAAGAACTTAGAAACCGAACTGGACCCATCAAATTGCCCTACACCGTGCTTCTTCCAACCAGTGAACCAGGGATGACTTTTAGAGGAATCCCTAACAGTGTCTCTATCTAA 2595 0.4166 MSSRVVKGRVVLIQKDVVKTLSNVKELASTGVKLIGSSVEYDITKSVIFKLISRTKSSSHCYDVAGKVGKETYLENNVSVSRRLGEREEEYDIYFEWDDTEMGIPGAFYVKNLMNDEFFLVSMSLEYPVPACDRDKDKNKIHFVCNSWVHNHKCYKTDRIFFDNIPYLPGSETPETLRKYREEELKNLRGDGTGKREQWDRIYDYDVYNDLGFLDSDGNQDHPILGGPHYPYPRRVRSGRKVIHNANNGGEYEKQGNYYYVPRDENFSHVKTSDFLDFGTKTLSESVEPLLLSLYLKVTSNEFNGFEEVQKLYEGGIGLPISITGNGTQNVLRFPPPQVIQESKFAWMSDEEFARQMIAGVNPCVIGLLKREELAPRSKLDCHCKQSSTITKEQLEINMGGVTVEEAFGCKRLFVLDYHDAFMPYLRKINDLPSAKAYATRTFLFLKDDGTLKPLAIELSKPHQCRIAVLPKPIIDVQPHPDGNYHLGVESKVVFPAEKGVESTIWLLAKAHVIVNDTNYHQLISHWLHTHAVMEPFAIATHRNLSVLHPIYKLLHPHYRDTININALARQSLINAGSIIEQTFLPGPYSMEMSSAVYKNWVFTDQALPNDLIKRGLAVKDHSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVQEYVSLYYSADVAVQRDTELQAWWKEVVEKGHGDIKDAQWPKMQTCQGLVDTCTIIIWIASALHAAVNFGQYPYGGYILNRPTQSRRWIPEPGSQEYDEMIKNPQEAFLRTITPKYQTVIDLTVMEILSRHSSDEVYLGQRDNPNWTSDQNAKDVFGTFTKTLGMIETKISQRNHNQELRNRTGPIKLPYTVLLPTSEPGMTFRGIPNSVSI* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00439 864 Pfam Lipoxygenase 177 847 IPR013819 GO:0016702|GO:0046872
Lapu10g00439 864 Gene3D - 499 863 - -
Lapu10g00439 864 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 6 167 IPR036392 GO:0005515
Lapu10g00439 864 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 167 864 IPR013819 GO:0016702|GO:0046872
Lapu10g00439 864 Pfam PLAT/LH2 domain 62 162 IPR001024 GO:0005515
Lapu10g00439 864 Gene3D PLAT/LH2 domain 1 167 - -
Lapu10g00439 864 Gene3D - 345 471 - -
Lapu10g00439 864 ProSitePatterns Lipoxygenases iron-binding region signature 1. 521 535 IPR020833 GO:0016702|GO:0046872
Lapu10g00439 864 ProSiteProfiles PLAT domain profile. 28 163 IPR001024 GO:0005515
Lapu10g00439 864 FunFam Lipoxygenase 500 863 - -
Lapu10g00439 864 PANTHER LIPOXYGENASE 37 864 IPR000907 GO:0016702|GO:0034440|GO:0046872
Lapu10g00439 864 SMART LH2_4 4 164 IPR001024 GO:0005515
Lapu10g00439 864 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Lapu10g00439 864 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Lapu10g00439 864 PRINTS Lipoxygenase signature 541 561 IPR013819 GO:0016702|GO:0046872
Lapu10g00439 864 Gene3D - 168 270 - -
Lapu10g00439 864 PRINTS Plant lipoxygenase signature 438 462 IPR001246 GO:0016491
Lapu10g00439 864 PRINTS Plant lipoxygenase signature 231 250 IPR001246 GO:0016491
Lapu10g00439 864 PRINTS Plant lipoxygenase signature 373 392 IPR001246 GO:0016491
Lapu10g00439 864 PRINTS Plant lipoxygenase signature 199 215 IPR001246 GO:0016491
Lapu10g00439 864 PRINTS Plant lipoxygenase signature 332 348 IPR001246 GO:0016491
Lapu10g00439 864 PRINTS Plant lipoxygenase signature 133 151 IPR001246 GO:0016491
Lapu10g00439 864 PRINTS Plant lipoxygenase signature 159 180 IPR001246 GO:0016491
Lapu10g00439 864 PRINTS Plant lipoxygenase signature 777 791 IPR001246 GO:0016491
Lapu10g00439 864 SUPERFAMILY Lipoxigenase 171 864 IPR036226 -
Lapu10g00439 864 Gene3D - 271 344 IPR027433 -
Lapu10g00439 864 ProSitePatterns Lipoxygenases iron-binding region signature 2. 548 558 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00439 Lapu-Chr10 6797848 6801946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00439 1 864 Acyl Lipid Metabolism Gene Families AT3G22400 48.552 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00439 K15718 - gmx:100802685 1374.76