Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00436 ATGTATTCAGGGGTGAAAGGGTTGCTGAACAGAAGCAGGAAGCTGAAGGGAACAGTGGTGTTGATGCGTAAGAATGTGCTGGATATCAACGCCGTCACATCAGCTAAAACTGCCACCGGGATCGTCCGCGGCGCCGCCGGTGTCGTCGGTGGTCTCATGGGAACCTCAGTCGACACTCTCACCTGCTTTCTCGGACGATCTGTGGCTCTCTGGTTGATCAGTGCCACCGCTGCTGATGGAAATGGAAATGGAAAAGTGGGAAAGAAGGCATATGTTGAAGGTATTATTACCTCGATACCAACTTTGGGAGCTGGGCAATCTGCATTTGATATTCATTTTGAATGGGACAGTGAGATGGGAATTCCTGGAGCATTTTTAATACAAAATTATATGCAAGTTGAGTTCTTCCTAGTCAGTTTGACTCTTGAAGATATTCCTAATCAAGGAACAATGCACTTTGTTTGTAACTCGTGGGTTTACAATTCTAAAAGCTACGAAAAGGATCGAATTTTCTTTGCCAACCAGACATATGTTCCAAGTGAAACACCAGGACCACTAGTGAGTTACAGAGAAGCAGAATTGCAGACTCTAAGAGGAAATGGAACAGGAAAGCGCAAGGAATGGGACAGAGTTTATGATTACGATGTTTACAATGATTTGGGCAAACCCGACAGCGGTGAAAACTTTGCTCGCCCAGTTCTTGGAGGATCTGTCACTTATCCCTACCCACGTAGAGGAAGAACTGGTAGAAAACCAACCAAAAAAGATTCCAACAGTGAGAAACCGGACGATATATTTTATGTTCCAAGAGATGAAAATTTCGGTCATTTGAAGTCATCTGACTTCCTTACTTACGGGATAAAAGCTTTATCTCGAAGCTTCTTGCCTAACCTCAAATCTTCATTTGATTTGAATTTCACACCGAATGAGTTTGATAGCTTCGAAGAAGTACGCGCACTATGTGAAGGTGGAATCAAGCTGCCTACAGATGTACTATGCAAAATTAGCCCTTTACCTGTGCTCAAAGAAATCTTTCGCACAGATGGTGAAAGTGTCCTTAAGTTTTCGGTGCCTCATTTAATTAAAGTTAGTAAATCTGCATGGATGACCGATGAAGAATTTGCAAGAGAGATGATTGCGGGTGTAAATCCTTGCGTGATTAGCCGTCTACAGGAGTTTCCACCACAAAGCAAGTTGGATCCCTCTGTCTATGGTGATAAAACAAGTAAAATAACTAAGCAACACTTGGAGATTAACCTTGAAGGGTTCACAGTAGATAAGGCAATTGAAGGCAAGAGACTATTCATATTAGATCACCACGACCTGTTTATGCCATTTTTGAGAAGACTAAACGAATCCAAAACAACAAAGGCTTATGCCACGCGGACAATCCTTTTCTTGAAAGATGATGGGACCTTAAAGCCACTGGTCATCGAATTAAGTTTGCCACATTCAAGTGAACAACAACTTGGTGCCAATAGTAAAGTCATCTTACCTTCAAATCAGGGAGTTGAAAGTACAATTTGGCTATTAGCCAAGGCTCATGTTATTGTGAATGATTCCTGCTATCATCAGCTCATAAGTCATTGGTTGAATACTCATGCTGTGATTGAACCCTTTGTCATAGCAACAAACAGGAATCTCAGTAGCAAACCTTTTTGGGTGGAAAACATGCAGTGGAGATGTCTACGGTAG 1695 0.4218 MYSGVKGLLNRSRKLKGTVVLMRKNVLDINAVTSAKTATGIVRGAAGVVGGLMGTSVDTLTCFLGRSVALWLISATAADGNGNGKVGKKAYVEGIITSIPTLGAGQSAFDIHFEWDSEMGIPGAFLIQNYMQVEFFLVSLTLEDIPNQGTMHFVCNSWVYNSKSYEKDRIFFANQTYVPSETPGPLVSYREAELQTLRGNGTGKRKEWDRVYDYDVYNDLGKPDSGENFARPVLGGSVTYPYPRRGRTGRKPTKKDSNSEKPDDIFYVPRDENFGHLKSSDFLTYGIKALSRSFLPNLKSSFDLNFTPNEFDSFEEVRALCEGGIKLPTDVLCKISPLPVLKEIFRTDGESVLKFSVPHLIKVSKSAWMTDEEFAREMIAGVNPCVISRLQEFPPQSKLDPSVYGDKTSKITKQHLEINLEGFTVDKAIEGKRLFILDHHDLFMPFLRRLNESKTTKAYATRTILFLKDDGTLKPLVIELSLPHSSEQQLGANSKVILPSNQGVESTIWLLAKAHVIVNDSCYHQLISHWLNTHAVIEPFVIATNRNLSSKPFWVENMQWRCLR* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00436 564 Pfam PLAT/LH2 domain 81 172 IPR001024 GO:0005515
Lapu10g00436 564 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 564 IPR013819 GO:0016702|GO:0046872
Lapu10g00436 564 FunFam Lipoxygenase 178 277 - -
Lapu10g00436 564 Gene3D - 178 277 - -
Lapu10g00436 564 PRINTS Plant lipoxygenase signature 241 260 IPR001246 GO:0016491
Lapu10g00436 564 PRINTS Plant lipoxygenase signature 308 329 IPR001246 GO:0016491
Lapu10g00436 564 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Lapu10g00436 564 PRINTS Plant lipoxygenase signature 459 483 IPR001246 GO:0016491
Lapu10g00436 564 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Lapu10g00436 564 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Lapu10g00436 564 PRINTS Plant lipoxygenase signature 392 411 IPR001246 GO:0016491
Lapu10g00436 564 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Lapu10g00436 564 SMART LH2_4 13 174 IPR001024 GO:0005515
Lapu10g00436 564 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 177 IPR036392 GO:0005515
Lapu10g00436 564 Pfam Lipoxygenase 186 550 IPR013819 GO:0016702|GO:0046872
Lapu10g00436 564 SUPERFAMILY Lipoxigenase 178 550 IPR036226 -
Lapu10g00436 564 Gene3D - 367 501 - -
Lapu10g00436 564 Gene3D - 278 366 IPR027433 -
Lapu10g00436 564 Gene3D PLAT/LH2 domain 4 177 - -
Lapu10g00436 564 Gene3D - 502 558 - -
Lapu10g00436 564 ProSitePatterns Lipoxygenases iron-binding region signature 1. 524 538 IPR020833 GO:0016702|GO:0046872
Lapu10g00436 564 PANTHER LIPOXYGENASE 13 550 IPR000907 GO:0016702|GO:0034440|GO:0046872
Lapu10g00436 564 PRINTS Lipoxygenase signature 524 541 IPR013819 GO:0016702|GO:0046872
Lapu10g00436 564 PRINTS Lipoxygenase signature 506 523 IPR013819 GO:0016702|GO:0046872
Lapu10g00436 564 ProSiteProfiles PLAT domain profile. 45 173 IPR001024 GO:0005515
Lapu10g00436 564 MobiDBLite consensus disorder prediction 240 262 - -
Lapu10g00436 564 FunFam Lipoxygenase 367 501 - -
Lapu10g00436 564 CDD PLAT_LH2 14 174 IPR042057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00436 Lapu-Chr10 6771552 6777441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00436 12 549 Acyl Lipid Metabolism Gene Families AT1G55020 55.920 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00436 K15718 - gmx:547694 929.087