Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00395 ATGTTTCTCCACATTGTCGTCCTCTTTTCCCTTCTCTTATCCACTTCTCATGCTACTGTCCAAGACTTCTGTGTGGCAGACCTCAAAAGTGCAGATGGCCCTGCAGGATATCCCTGCAAGGCACCAGCTAAAGTTACTTCAGATGACTTTGCTTTTGCCGGCATATCTGAAGCTGGAAATGTCACAAACATAATCAATGCTGCTGTGTCCCCAGCATTTGTTGGTCAATTTCCAGGTGTTAATGGCCTTGGTCTCTCTGCAGCAAGGTTAGACCTTGGTCCTGCCGGAGTTATCCCACTGCACACTCATCCTGGTGCCAATGAACTTCTAATAGTGATTCAGGGCCACATCCTTGCCGGATTTGTATCATCAAATAACATTGTTTATCAGAAGGTACTAAAAAAGGGAGAGCTTATGGTCTTCCCACAAGGGTTGTTGCACTTTCAAATAGCAGTTCATAAGAGGAAGGCCCTTGGTTTTGCTGTTTTCAGCAGTGCAAACCCTGGCCTCCAAATCCTTGACTTTGCACTGTTTGCCAGCAACTTCTCTACACCTTTGATCACACAGACTACTTTCCTTGACCCTGACCTAGTGAAGAAGCTTAAGGGTGTTCTTGGGGGCAGTGGTTAG 630 0.4619 MFLHIVVLFSLLLSTSHATVQDFCVADLKSADGPAGYPCKAPAKVTSDDFAFAGISEAGNVTNIINAAVSPAFVGQFPGVNGLGLSAARLDLGPAGVIPLHTHPGANELLIVIQGHILAGFVSSNNIVYQKVLKKGELMVFPQGLLHFQIAVHKRKALGFAVFSSANPGLQILDFALFASNFSTPLITQTTFLDPDLVKKLKGVLGGSG* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00395 209 Pfam Cupin 55 193 IPR006045 -
Lapu10g00395 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Lapu10g00395 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 200 - -
Lapu10g00395 209 Gene3D Jelly Rolls 17 208 IPR014710 -
Lapu10g00395 209 SUPERFAMILY RmlC-like cupins 18 202 IPR011051 -
Lapu10g00395 209 CDD cupin_OxOx 16 205 IPR001929 GO:0030145
Lapu10g00395 209 SMART Cupin_1_3 53 199 IPR006045 -
Lapu10g00395 209 FunFam Auxin-binding protein ABP19a 17 208 - -
Lapu10g00395 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Lapu10g00395 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Lapu10g00395 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00395 Lapu-Chr10 6315564 6316193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00395 17 209 Miscellaneous Gene Families AT1G72610 65.803 1.21e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00395 - - gmx:100500326 341.658