Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00394 ATGATTTGCACTCTTTTCCTCTTCGCTCTTCTATCATTCACTTCCAATGCGGCTGTCAATGATTTCTGTGTAGCAGACCTAAAGGGTCCAGATAGCCCTTCAGGCTATCAGTGCAAGCCACCTAAAACAGTAACGGTGGATGACTTTGTGTTCTCTGGCTTTGTAGCTGGAAACACCACAAACACTTTCAATGCTGCTTTAACTTCTGCATTTGTCACTGATTTTCCAGGTGTGAATGGTCTTGGTGTATCCGCAGCACGCTTAGACATAGCAAAAGGTGGATCAATCCCAATGCACACACACCCTGGTGCCACTGAACTTCTGATAATGGTGGAAGGTCAAATCACTGCCGGCTTTATGACACCATTTGCAGTTTATACGAAGACACTGAAACCAGGAGATGTTATGGTTTTTCCACAAGGACAATTGCATTTTCAAGTGAATTCTGGAAAAGGAAAAGCTACTGCTTTTCTGGCTTTCAGTAGCGCAAACCCTGGAGCACAACTACTTGACCTTCTATTATTCGGTAATAGCTTACCTTCTGACTTGATAGCACAAACCACCTTCCTTGACGTTGCCCAAGTGAAGAAGGTTAAGGGACGTTTTGGTGGCAGAGGCTAG 621 0.4444 MICTLFLFALLSFTSNAAVNDFCVADLKGPDSPSGYQCKPPKTVTVDDFVFSGFVAGNTTNTFNAALTSAFVTDFPGVNGLGVSAARLDIAKGGSIPMHTHPGATELLIMVEGQITAGFMTPFAVYTKTLKPGDVMVFPQGQLHFQVNSGKGKATAFLAFSSANPGAQLLDLLLFGNSLPSDLIAQTTFLDVAQVKKVKGRFGGRG* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00394 206 Pfam Cupin 55 195 IPR006045 -
Lapu10g00394 206 ProSitePatterns Germin family signature. 94 107 IPR019780 GO:0030145
Lapu10g00394 206 SUPERFAMILY RmlC-like cupins 18 201 IPR011051 -
Lapu10g00394 206 PRINTS Germin signature 99 119 IPR001929 GO:0030145
Lapu10g00394 206 PRINTS Germin signature 128 148 IPR001929 GO:0030145
Lapu10g00394 206 PRINTS Germin signature 161 176 IPR001929 GO:0030145
Lapu10g00394 206 FunFam Auxin-binding protein ABP19a 16 205 - -
Lapu10g00394 206 SMART Cupin_1_3 52 196 IPR006045 -
Lapu10g00394 206 CDD cupin_OxOx 15 202 IPR001929 GO:0030145
Lapu10g00394 206 Gene3D Jelly Rolls 15 205 IPR014710 -
Lapu10g00394 206 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 15 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00394 Lapu-Chr10 6306015 6306796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00394 1 204 Miscellaneous Gene Families AT5G20630 58.252 1.81e-79 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00394 - - gmx:100783206 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00394 10 6306015 6306796 Lapu10g00394 10 6306015 6306796 ECH