Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00387 ATGGCGGTTTCTACTATAGCCTTGTACGCGAGTCCGCCGAGCAGCGTGTGTTCCACGCCGCACCCTTGCCAGATCAACGCTCACGCTTCCTACGACTTCGATTTGGGGTCACGATCTTCGTCGCCGGCGGCGTCGACGGCACCGCCGTCGACGTCGCAGAAGCCGGTGATGGGTGGCCTCTCGTGCCTGTTCTCTTCTCCGGCGCCGGCGGTGAAACACGCACCGTTGTCGTCGAACTTTACCGGCGAGGAGGACGATTTGAAGGAGTTGGGCAGTTCCTTCTCGTATTCTCCGAGCAAGTTTGGTGGGTCTTCGTGGAAGAGGGATCAGAGTCCTGTGTCGGTTTTTCATGGTCCTGTTTCGTGTAGTAGTAGCAGCAGAAGTTCCATTAGTTCTACCTCTGTGAGAAGTACCAGGGGTGGGACCAGTGGGTTGTTTCGTGGGTTTGTGAGGAATGCGTTGGGGTCTTGTTTGGATTATGACTTAGATGCGGGTGATTCTTCTGCCGCGCTTGTGGATGAGTTGACCTTCAATTTAGAGGATAATTTCGTGGAGGGTGGGTTTCATTTTGAGCCCTATGCCAAAAAGTTGCTGCTGGGGGCGCAGTTGAGACACAAGATCTTCTGTGAGGAGTTTGTCATCAAGGCCTTTTGTGAAGCTGAGAAGGCACACAGAGGGCAGATGCGTGCTAGTGGGGATCCTTACTTGCAGCATTGTTTGGAGACTGCTGTGTTGCTGGCTTTAATTGGTGCCAATTCCACTGTTGTGGCTGCGGGGCTCTTGCATGACACGCTGGATGATGCTTTTCTGACATATGATTATATATTTGGAACGTTTGGCGCTGGAGTTGCTGATTTAGTTGAAGGGGTATCTAAACTGAGCCACTTAAGCAAGCTGGCTCGAGAAAATAATACAGCTTGCAAGTCAGTTGAAGCAGATCGCTTGCATACTATGTTCCTTGCCATGGCAGATGCAAGAGCTGTCCTCATTAAACTGGCAGATCGGTTGCATAATATGATGACACTAGATGCATTGCCAGTGACCAAGCGGCAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCATTGGCCAATCGCTTAGGAATTTCTAGCTGGAAAGAACAACTAGAAAATTTGTGTTTTAAGCATCTCAACCCAAGCCAACACGAGGAGCTTTCATCAAAGCTTGTGGAGTCGTACGATGATGCAATGATTACTTGTGCAATCGAGAAATTAGAGCAAGCCCTCAAAGAAGAAGGCATATCTTATAATGTCATTTCTGGGCGGCACAAGAGCTTGTATAGCGTTTACTGCAAAATGTTGAAGAAGAAACTCACCATAGATGATATCCATGACATTTATGGACTGCGCTTGATTGTTGACAAGGAAGAAGACTGTTATAAAGCCTTAACAGCTGTTCATCGGTTATGGTCTGAGGTGCCTGGAAAGCTGAAAGATTACATATGTCGCCCCAAGTTCAATGGATATCAATCTCTGCATACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATCCGAACGAAAGATATGCATTTGCAAGCAGAATTTGGATTTGCTGCTCACTGGAGATACAAGGAAGATGATTGCCAGCACTCTTCATTTGTGCTTCAGATGGTGGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGCGAAGCAATGAGTAGGGATTGTTCGTCTGTTGGATACGCTGATTCGGTCAAGCCCCCATGCAAGTTCCCTTCCCATGCCACTGATTGCCCATATTCCTATAGGCCTGACTGTGGTCAGAATGGGCCCGTGTTCGTTATCATGATTGAGAATGACAAGATGTCTGTCCAAGAATTCAGTGCAAACTCAACCATATTGGATCTGTTGGAAAGAGCTGGGCGTGCAAGCTCTAGGTTGACGACATATAGGTTCCCATTGAAGGAAGAGTTGAGGCCAAGGCTGAACCAGAAGCCTGTGAGTGATCCCAATAGCAAGTTGAAGATGGGAGATGTTATTGAACTTACACCAGCCATACCTGACAAGTATCTTACAGAATACAGGGAAGAAATCCAGCGTATGTATGATCGAGGGCTAACCGTATCAAGCATGGGGACTTCTGCAAGTACCATGGTTGGCTCAAGAAGTTGA 2148 0.4804 MAVSTIALYASPPSSVCSTPHPCQINAHASYDFDLGSRSSSPAASTAPPSTSQKPVMGGLSCLFSSPAPAVKHAPLSSNFTGEEDDLKELGSSFSYSPSKFGGSSWKRDQSPVSVFHGPVSCSSSSRSSISSTSVRSTRGGTSGLFRGFVRNALGSCLDYDLDAGDSSAALVDELTFNLEDNFVEGGFHFEPYAKKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYIFGTFGAGVADLVEGVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVTKRQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPSQHEELSSKLVESYDDAMITCAIEKLEQALKEEGISYNVISGRHKSLYSVYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTAVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSRDCSSVGYADSVKPPCKFPSHATDCPYSYRPDCGQNGPVFVIMIENDKMSVQEFSANSTILDLLERAGRASSRLTTYRFPLKEELRPRLNQKPVSDPNSKLKMGDVIELTPAIPDKYLTEYREEIQRMYDRGLTVSSMGTSASTMVGSRS* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00387 715 ProSiteProfiles HD domain profile. 235 339 IPR006674 -
Lapu10g00387 715 SUPERFAMILY HD-domain/PDEase-like 196 386 - -
Lapu10g00387 715 SMART RelA_SpoT_2 429 539 IPR007685 GO:0015969
Lapu10g00387 715 Pfam Region found in RelA / SpoT proteins 429 538 IPR007685 GO:0015969
Lapu10g00387 715 FunFam GTP pyrophosphokinase RelA 387 519 - -
Lapu10g00387 715 CDD HDc 233 361 IPR003607 -
Lapu10g00387 715 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 122 680 - -
Lapu10g00387 715 Gene3D Beta Polymerase, domain 2 390 519 IPR043519 -
Lapu10g00387 715 SMART hd_13 231 348 IPR003607 -
Lapu10g00387 715 SUPERFAMILY Nucleotidyltransferase 376 565 IPR043519 -
Lapu10g00387 715 ProSiteProfiles S4 RNA-binding domain profile. 653 690 - -
Lapu10g00387 715 CDD NT_Rel-Spo_like 408 527 IPR007685 GO:0015969
Lapu10g00387 715 Gene3D Hypothetical protein af1432 202 386 - -
Lapu10g00387 715 Pfam HD domain 220 370 - -
Lapu10g00387 715 FunFam GTP pyrophosphokinase RelA 197 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00387 Lapu-Chr10 6263796 6269418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00387 230 536 EF-hand Containing Proteins AT3G17470 30.091 1.87e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00387 K00951 - gmx:100787301 1316.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00387 10 6263796 6269418 Lapu10g00387 10 6263796 6269418 ECH