Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00377 ATGTCTTGGGCAGGCCCTGAGGATATTTACCTTTCCACTTCACTTGCCAGCTATCTTGACAAGAAACTTCTTGTATTGCTAAGAGATGGCAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCAGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTGTATTGTGACATCCCTTTGGGTCTCTATGTGATCCGTGGGGAAAATGTTGTTCTAATTGGTGAGCTGGACTTGGAGAGGGAGGAACTCCCTGAACACATGACTCGTGTTTCTACAGCAGAAATCAAGAGGGCGCAGAAAGCAGAAAGGGAGGCCTCAGATCTGAAAGGGACTATGAGAAAAAGAATGGAATTCCTTGACTTTGACTAG 387 0.4548 MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDFD* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00377 128 SMART Sm3 13 81 IPR001163 -
Lapu10g00377 128 Pfam LSM domain 14 80 IPR001163 -
Lapu10g00377 128 Gene3D - 12 126 - -
Lapu10g00377 128 SUPERFAMILY Sm-like ribonucleoproteins 13 83 IPR010920 -
Lapu10g00377 128 CDD LSm1 12 82 IPR034104 GO:0000956
Lapu10g00377 128 ProSiteProfiles Sm domain profile. 10 85 IPR047575 GO:0003723
Lapu10g00377 128 PANTHER LSM1 8 122 IPR044642 -
Lapu10g00377 128 FunFam U6 snRNA-associated Sm-like protein LSm1 12 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00377 Lapu-Chr10 6101145 6105025 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00377 K12620 - gmx:100306352 253.832