Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00317 ATGGTGGTGGCTGCGGGCGCTAAGTTCAATTTGAGAAGAGATAATGGTTCTTCTCATAATGGTATCAACGGTTATAGCAGTGATGGAGAACTTTCTAGAATTAGTAAGAGTGGCTGTTTTTCATCAGTAACAGAGGTGGACAGAGACCCTTCTTGCATTTCATTCACCACTTTCAACATTCTTGCTCCGATATACAAACGGATTGATCCACAGAACCAAGGCCTACGAGAAAGTGACCGCAGATCATTTTGGTTGTCCAGGAATGAGAGGATTCTTGATTGCTTGCTTTCTGAATCGTCTTCCATTATGTGCCTTCAGGAATTTTGGGTTGGAAATGAAGAACTTGTTCACATGTATGAGGAGAGACTTGGAGATGCTGGCTACAATCTCTTCAAGCTTGGTCGAACCAACAACCGCGGAGATGGTCTACTGACTGCTATACATAAAGAATGTCTTAGAGTTGTGGATTATCGAGAGTTGCTTTTTAACGATTGTGGCGATCGTGTTGCTCAATTGCTACACGTTCAGTCAGTTGCCCCCTCTCAAAACCAAAACGGCAGTGTTCCCCAGGAGTTTCTGATTGTGAACACCCACTTGTTATTTCCTCACGATTCAAGTCTTTGTGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCCATGCCTATTATACTCTGTGGCGATTGGAATGGCAGCAAGCGTGGGCATGTTTACAAATTCCTTAGGTCACAGGGGTTTGTATCATCATATGATATTGCTAATCAATACAGTGACAGTTATGCAGATGCTCAGAAGTGGGTTAGTCACCGAAATCATAGAGGAAATATCTGTGGCGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTGAAGACCAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTGCGAAAAGCATCATTGTCTGAAAATGATGCATTTGCCTTTCTGAAGGGTGACTATGCTGATACTGTGACATATTTTAGTTTCTCCGAAGCACTTCGTCAGGTAAAGTTAATCGGTGTGCCTTATGGATTATGTTTTCAACAATTACAAGATCTATGGAATCAAGCAGATGTTGATGGGAATGGTGTCATAGACTTTGAAGAGTTCAAGCAGAAGATTTGGAATTCAGCATGTCCAGATCACGTGTTAGAAAATTTGAATGGGTGCATGGAAGATGGTAACACAGAATTGGAGCAGCAAGTAGCCATTGGTTTTAAGATAAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTCTCTGATCATGCTAGACTCACAGCTGTGTTTTCACCAGCAAGGATGAGATGTTCTGGCACACAAAACTGA 1419 0.4172 MVVAAGAKFNLRRDNGSSHNGINGYSSDGELSRISKSGCFSSVTEVDRDPSCISFTTFNILAPIYKRIDPQNQGLRESDRRSFWLSRNERILDCLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYNLFKLGRTNNRGDGLLTAIHKECLRVVDYRELLFNDCGDRVAQLLHVQSVAPSQNQNGSVPQEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYSDSYADAQKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASLSENDAFAFLKGDYADTVTYFSFSEALRQVKLIGVPYGLCFQQLQDLWNQADVDGNGVIDFEEFKQKIWNSACPDHVLENLNGCMEDGNTELEQQVAIGFKIKNAMLYPREVEKGLWPEDYSLSDHARLTAVFSPARMRCSGTQN* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00317 472 Gene3D Endonuclease/exonuclease/phosphatase 39 466 IPR036691 -
Lapu10g00317 472 SUPERFAMILY EF-hand 342 396 IPR011992 -
Lapu10g00317 472 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Lapu10g00317 472 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Lapu10g00317 472 FunFam Putative calcium-binding protein 37 464 - -
Lapu10g00317 472 Pfam Endonuclease/Exonuclease/phosphatase family 86 302 IPR005135 GO:0003824
Lapu10g00317 472 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 41 460 - -
Lapu10g00317 472 SUPERFAMILY DNase I-like 47 266 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00317 Lapu-Chr10 5522580 5526969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00317 118 468 EF-hand Containing Proteins AT1G02270 62.606 7.44e-163 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00317 - - gmx:100788191 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00317 10 5522580 5526969 Lapu10g00317 10 5522580 5526969 ECH