LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu10g00292	ATGTCTTTCACTGCAACCAAGTTTGCAGCCTCTCCTCTCCCTCTCAATTCCACCACCCCCAGATCCAATGACAAGCCTCTCTCTTTCTCCTTCGATCACTCCAAAACCGACCCTTCTTCCTCCTTCCTTGGATCCACTCGCAAGCTTCTTCGCTTCAATGCTCTTGCTAAGACTCGTGCTCACGCTCGTGCTTCTTCCCCTGTTGCTGCTGTTCTTCTCCAACAGACCTCCAATCTGGTGACCCTTTCTCCTCCTTTCTTCATTGAAAAATCCCTGATTTCTGTGGACGGGTATTGGTTATGTGACATGGGTTTGCTTGTTACTAAAGAGGAAGGGTTGGAGCTCTATGAAGACATGATACTAGGGAGGTTCTTCGAGGACAAGTGTGCTGAGATGTATTATAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAGGCTGTATCAACTGGATTCATCAAGCTTCTGAAGAAGGAGGATTATGTAGTGAGCACCTACAGAGATCATGTTCATGCATTGAGTAAGGGGGTCTCATCTCGGGCCGTAATGAGTGAACTCTTTGGAAAGGCAACAGGGTGCTGCCGAGGTCAGGGTGGTTCAATGCATATGTTCTCAAAAGAGCACAACATGCTTGGTGGCTTTGCATTCATTGGTGAAGGAATTCCAGTGGCCACTGGGGCTGCATTTTCGAGCAAGTACAGAAGGGAGGTGTTGAATCAGGCTGATGCTGATCAGGTGACATTGGCTTTTTTTGGAGATGGGACTTGTAACAATGGACAGTTCTTTGAATGCCTGAACATGGCAGCTCTATGGAAATTGCCAATTGTATTTGTGGTGGAGAATAATTTGTGGGCTATTGGGATGTCACATCTCAGGGCAACTTCAGATCCTCAGATATGGAAGAAAGGACCAGCGTTTGGAATGCCAGGGGTTCATGTTGATGGAATGGATGTTTTGAAGGTCAGAGAGGTGGCAAAGGAAGCAATTGAAAGGGCTAGAAGGGGAGAGGGACCAACTCTGGTGGAATGTGAGACCTATAGATTTAGAGGACATTCATTGGCTGACCCTGATGAGCTTCGCGACCCTGCTGAGAAGGAACACTATTCTGGTAGGGATCCCATCACTGCCCTGAAACAATACCTTATTGAGAACAATTTAGCCAGTGAGCAAGAATTGAAGGCCATAGAGAAGAAAATCGACGAGGTTCTTGATGATGCAGTTGAGTTTGCAGACAAGAGCCCTCTTCCACCCCGCAGTCAGCTTCTGGAGAATGTCTTTGCTGATCCTAAAGGCTTTGGAATTGGACCTGATGGAAAGTATAGATGTGAGGATCCAAAATTCACTGAAGGCACTGCTCAAGTCTAA	1374	0.4665	MSFTATKFAASPLPLNSTTPRSNDKPLSFSFDHSKTDPSSSFLGSTRKLLRFNALAKTRAHARASSPVAAVLLQQTSNLVTLSPPFFIEKSLISVDGYWLCDMGLLVTKEEGLELYEDMILGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDYVVSTYRDHVHALSKGVSSRAVMSELFGKATGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLNQADADQVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEHYSGRDPITALKQYLIENNLASEQELKAIEKKIDEVLDDAVEFADKSPLPPRSQLLENVFADPKGFGIGPDGKYRCEDPKFTEGTAQV*	458

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu10g00292	457	Gene3D	-	95	439	-	-
	Lapu10g00292	457	PANTHER	PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR	105	440	-	-
	Lapu10g00292	457	Coils	Coil	388	415	-	-
	Lapu10g00292	457	MobiDBLite	consensus disorder prediction	14	41	-	-
	Lapu10g00292	457	NCBIfam	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	109	430	IPR017597	GO:0004739\|GO:0006086\|GO:0043231
	Lapu10g00292	457	SUPERFAMILY	Thiamin diphosphate-binding fold (THDP-binding)	107	432	IPR029061	-
	Lapu10g00292	457	CDD	TPP_E1_PDC_ADC_BCADC	115	413	-	-
	Lapu10g00292	457	FunFam	Pyruvate dehydrogenase E1 component subunit alpha	93	438	-	-
	Lapu10g00292	457	Pfam	Dehydrogenase E1 component	119	419	IPR001017	GO:0016624

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu10g00292	Lapu-Chr10	5233813	5237307	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu10g00292	5	457	Acyl Lipid Metabolism Gene Families	AT1G01090	74.837	0.0	676

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu10g00292	K00161		-	gmx:100793091	805.438

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu10g00292	10	5233813	5237307	Lapu10g00292	10	5233813	5237307	ECH