Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00291 ATGGAGCTCGACATCCATTCCCTCCTTCACTCTTCCACCTCCGCTTCCTCCTCCGACGCCGACGATGACGCTCCTCACCGCACCATCGATGATATCCTCAACGACTGTGACACTTCCTCTTCCTCAACCTCTCCACCTTCCTCTCCCTCTCACTCCCTCTCTTCACTCACCAATTCCCATCCTCAAAACCCCACTCTTCAACCAAAACCACTCCAACCCGCTCTCAATTCAATTTCTCGGCTCAAATCCGCCGAATTCTCCGATCGCACACGCGTTTCGCGCCCGTTCTCTTCTCTATTACACGGCGTGCGGTCCAATGCGAAGCCCGGGGACGCTCTTGCAGCGGCTGCAGCGGCGTCTCGATCCGTTCCTACGCCGCACGCGGCGGCGATCATTTCCAGGAGGAAATCTGCGGCCACGATCAGCACCGAGTTGAGTTCGATCACTGCCGCCGGTGACGATAATTCCGATGTTTCTTCCAAAGGCGAATTCGGCGAGCCTAGCGAGAAATACGATCCTGTGCCCCGGAAAATCGAGACTCAGTCTAATGAAAGTGCTTCTGTTAGTGGCGAACGTGTTGAGAGTGATGCAGAAATTGCCAATGATGTGAAGGCTGGTAGTGCCGCTGACAATCAAGTGCATAGTGATACTGATAGTGACAATGATGATGGAAATGGCAATGATAACTATTCTTCTGTAGTGAGTGAGGAGAATAGGAATTTAGATGAAGTTGACGGTGATCATGGGAAAGATATGAATTCTGCACCATTTGATGAAGAAGATGATGATGATCGTGACTTGGATGGGAATGATGGTGCTGATGAGAGAATCACAGCTACCGATTCAGCATTGGAAGCCGAAGAAACGGCGAATAATGGTGGCAGTTATATGGAAGATGTTAAGAATGAGACGAGTGGTGGGGGTGGTGATGAGGGTAGTTCATTGGGTGATGTTTCAGAGCTAGTGGAAGAGAGGCTCGAGGAATTAGAAAGCAGAATGGCTGCTAAGAGAGCAGAGAAGAAACGAGAATCTTCAATGAAACCGCTTGAATTGGCTGAAGAACTAGAGAAGAAGCGAGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCTGCCCAGCCTATGAGGCTCGAGGGCGTTCGGAGAGGGTCCACGACGTTGGGATACTTTGATGTTGATGCTGATAATGCAGTCACGAGGGCAATTTCGTCTCAAACATTCAGACGTGAGCAAGGTTCTGCTCGAGCCTTGGCAGTTCATGCTAATTATATTGCAATAGGAATGTCAAAAGGGCTAATTGCTGTCTTTCCCAGTAAATATTCCATTCATCATGCTGACAACCCTGATGGAAAGATGTTGATGCTTGCTATACAAGGCGATCGGTTGCGTGCTCCAGTTACATCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGCCATCTTACCCTGTGGGATGTACAGAAAGGGGTTGTGGCAAAAATTATTAGTGGTGAGCATGCAGCACCAGTAGTGCATACCTTATTTCTAGGACAAGATCCTCAGAATACTCGTCAATTTAAAGCTGTCACTGGTGATTGTAAGGGTCTGGTTCTCTTGCACATTATCTCAGTGGTTCCTTTGTTCAGTAGATTCTCCATCAAAACTCAGTGTCTGCTTGATGGGCAAAGTACAGGCTTGGTACTTTCAGCTTCACCACTCCTTTTCGATGACTTTAGTGGAGGTGCTTCACCTTTTTCTCAGGGAAACACCTCAGCCCCAGCCAGCAGTATAAGCAGCATGATGGGTGTTGTTGGCGGAGATGCTGGTTGGAAACTCTTCAATGAATCCTCTTCTTTGGTGGAAGAAGGTGTGGTTGTATTTGTAACCCATCAAACTGCATTGGTGGTACGGCTGAGCCCTACATTGCAAGTCTATGCCCAACTCTCTAGGCCTGATGGGGTTCGGGAGGGTTCTATGCCTTATACTGCCTGGAAATACATGACACAAACACATAGTTCTACTGAAAATATGTCTGCAGAAGCTATTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGTAAGGTTCTGGTTGCAAAGTTGGTTAAATCAGAACTAAAAGTATATGGAAGATGGTCTCTCGAAGGTGCGGCGATAGGTCTAGCATGGTTGGATGATCAGATGCTAGTAGTTCAAACTTCAAGTGGACTACTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTGTTGCCGTAGATGGTATTGGAGGAGATGATCTAGTCTCTTATCATACTCACTTCATCAATGTATTTGGAAATCCTGAGAAAGCTTATCATAACTCTGTTGCTGTTAGAGGAGCTTCTATTTATATACTTGGTCCAACACATGTTCTCATTTCTCGTCTTCTACCTTGGAAAGAGCGTATTTCTGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTATGATGGCCAGGCTCATGGGGTTATTGACCTTCCTAGAACCTTGGATGCTGTACATGAGGCCATAATGCCCTTCTTGGTGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCAGTGGCATTCTGCAACCAAATTGGTAAAGTGGACCAATCCAATGATTCAAATAGTAGAAGCAATTCAGTGCATTGTGATATAAAGGAGCAATACACCCGAGTTGGTGGGGTTGCTGTTGAATTTTGTTGTCATATCAAACGGATGGACATTCTTTTTGATGAAATTTTCTCCAAGTTCGTGGGTGTTCAACAGCGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAAGATATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGTACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCATATGGATATATCATCCTTGGATTTTAATCAGGTCGTCAGATTATGTCGGGAGCATGGACTATATAGTGCCCTGGTGTACGTCTTCAATAAAGGATTAGATGATTTTAGGGCACCTCTGGAGGAGCTATTTGCTGTCTTACAAAATAGCCAAAAGGAAAGTGCAACTGCGCTTGGGTATAGAATGTTGGTTTATCTCAAGTACTGCTTTACAGGTCTTCCCTTTCCACCAGGTCGTGGAACTATTCCTCCCACACGCTTACCTTCTCTTAGAAGAGAACTTGTGGAGTTTTTGTTAAAGGACTCCTATACATCGAAATCTCAGACAATTTCAGACTTTTCCAGAGGACCCCATCTAAATCTTTATCTTCTCTTGAAGTTAGACACTGAAGCTACATTAGATGTCCTCAGATGTGCTTTTATGGAAGATGAAATTTCAAATGCGTGCTCATCTTCACCAGATTCAGCCAATAAACCTATAGAGGAAGCAAAAAAAGAAGATAATGTTACTGAAACTCAAAATGCTTTGGTTCAGAACACAGTTGATGCTCTCATTCAAATAATTGATATGAATATTGTTCAGGCAGATACAACCTTTAGTAGTGGTGATGATGGGTTGATAAAAGAGTGGCCTTCCAAGGACATAGGTTATCTGTTTGAGTTCGTTGCTTATTATGTTGCTCTCCAAAGAGCCAAAATTTCAAAGAGTGTGCTGTGTCAGATATTGGAATATTTGACATCTGATAGTCACTTATCTAGCTATATTTCTGTTCATGGTTCAACTCTAAAAAATAGGGAGAAACAAGTACTTGCACTTTTGGAAGTACTTCCCAAGTCAGACTGGGATCCGTCATTTGTGCTAGATCTATGTGAAAGAGCCAAATATCATCAGGTTTGTGGATTGATCCATAGTGTCAGACATGAATATGTGGCTGCATTGGATAGTTATATGAAAGATGTAGATGAGCCTGTTCATACTTTCTCCTTTATTAACAAAGCATTATCACAGTTAACTGACAATGACCGTGTAGCATTTCGGTCAGCAGTCATATTGCGAATTCCTAAATTGGTTGAACTAAGCAGAGAGGGTGCATTCCATGTGGTTATCAGTCATTTTAGCGAAGAAAGTTCCCATATCATAACTGAACTACACTCTCATCCAAGAAGTCTTTTTCTTTATTTAAAGACACACATTGAGCTTCACTTATTTGGCACCCTAGACTTGTCAAATTTGAGAAAGGATGACACTGTGAATCCCCTTAATGGAAGGCAGGTTAAGGATCACCCTGAAGGAGTCGGAGATTACTTAGAGAATATATCCAATTTCCCCAAGTACATGCGGGAAAAACCTATTCCTGTGTCTGATGATCTTATTGAGCTCTACCTTGAGTTATTATGCCAGTATGAAGGTAGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTTGAACATTGTTTACGCCTGTGCCAAGAATACGGCATTATAGATGCAACTGCATTTTTATTAGAAAGGGTTGGTGATGTTGGTAAAGCTCTTTCACTTACACTTTCTGATCTAAATGATAAATTTCTTGAGCTTGATGCTGCTGTGGAGGCTGTAGTTTTAGATCATCGCAGAGTTGGTTCTTCACATGTGGAAGTATTTGACAGTGTTTTAAGAACAAAGGAGGGAAGTGACATCCACAATTTATTGCGTGCCTGTGTTGGTCTGTGCCAGCGGAACACTCCTCGTCTAAATCCTGCGGAGTCAGAAGCACATTGGTTTAAATTACTTGACTCGTTTTGTGATCCTTTGATCGATTCAAATGTTGAAGGAGCCTATGAAAGTGAAAATTATTTTGGAATGCTAGCTGGATCAGCAGATTCACAACAGGACAATGACACCTATAATAAAAGCAGCTGGAAAATTTCAAAGTCCCGGAATGGTCATATCTTGAGAAAATTGCTATCACAGTTTATTAAAGAGATTGTAGAGGGAATGATTGGTTTTGTTCACCTTCCAACAATTATGTCTAAACTTCTTTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACTTACAATATTGGGAATGCTGGGAACGTATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCGCTAATAGAAGATGACTCGTTTTATACAATGAGTTTACTCAAGAAAGGGGCCTCACATGGATATGCTCCCAGGAGTCTCGCGTGCTGTATTTGTAATTGCCTTCTTACAAAGAACTCTGGTAGCTCTGGAATTCGGATTTTCAACTGTGGCCACGCAATTCATCTCCAATGTGAAGTTTTGGAAATTGAGGCATCAAGCAAAGGTTCTTCGTCAGGATGCCCTTTATGCATGCCTAGCAAGAAATCCCAGCAGTCCCGAAACAAATCAATCATTGCAACGAATGGCTTGGTCAATAAATTCTCATCAAGGCGCCAGTACCCCCATGGAAGTACCATTCATACCCATGACAATGATTTGACAGAGAATATGTATGGACAACAACAGATATCACGGTTTGAGATCTTGAGCAACCTGCAAAAAAATCAGAGATTTATGCAAATAGAAAACTTGCCTCAGTTGAAGCTTGCCCCACCTGCTGTGTACCATGAAAAGGTAAGTAAAGTTGCAAACTTTCTGACGGGCGAAAGTAGCAATAATTCTTCTGCTATGGAGAAACAAAGTAGAAACAAGCAAAACCGGGAACTAAGAGTTAAGGGTTCATCAATTCGATTTCCTTTAAAATCAAGTATATTTGGCAAGGAGAAGACAAGTAAGCGGTGA 5739 0.4264 MELDIHSLLHSSTSASSSDADDDAPHRTIDDILNDCDTSSSSTSPPSSPSHSLSSLTNSHPQNPTLQPKPLQPALNSISRLKSAEFSDRTRVSRPFSSLLHGVRSNAKPGDALAAAAAASRSVPTPHAAAIISRRKSAATISTELSSITAAGDDNSDVSSKGEFGEPSEKYDPVPRKIETQSNESASVSGERVESDAEIANDVKAGSAADNQVHSDTDSDNDDGNGNDNYSSVVSEENRNLDEVDGDHGKDMNSAPFDEEDDDDRDLDGNDGADERITATDSALEAEETANNGGSYMEDVKNETSGGGGDEGSSLGDVSELVEERLEELESRMAAKRAEKKRESSMKPLELAEELEKKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVTRAISSQTFRREQGSARALAVHANYIAIGMSKGLIAVFPSKYSIHHADNPDGKMLMLAIQGDRLRAPVTSMSFNQQGDLLLAGYGDGHLTLWDVQKGVVAKIISGEHAAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLLHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGGASPFSQGNTSAPASSISSMMGVVGGDAGWKLFNESSSLVEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREGSMPYTAWKYMTQTHSSTENMSAEAIERVSLLAIAWERKVLVAKLVKSELKVYGRWSLEGAAIGLAWLDDQMLVVQTSSGLLYLFSKDGTVIHQTSVAVDGIGGDDLVSYHTHFINVFGNPEKAYHNSVAVRGASIYILGPTHVLISRLLPWKERISVLRKAGDWMGALNMAMTLYDGQAHGVIDLPRTLDAVHEAIMPFLVELLTSYVDEVFSYISVAFCNQIGKVDQSNDSNSRSNSVHCDIKEQYTRVGGVAVEFCCHIKRMDILFDEIFSKFVGVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELFAVLQNSQKESATALGYRMLVYLKYCFTGLPFPPGRGTIPPTRLPSLRRELVEFLLKDSYTSKSQTISDFSRGPHLNLYLLLKLDTEATLDVLRCAFMEDEISNACSSSPDSANKPIEEAKKEDNVTETQNALVQNTVDALIQIIDMNIVQADTTFSSGDDGLIKEWPSKDIGYLFEFVAYYVALQRAKISKSVLCQILEYLTSDSHLSSYISVHGSTLKNREKQVLALLEVLPKSDWDPSFVLDLCERAKYHQVCGLIHSVRHEYVAALDSYMKDVDEPVHTFSFINKALSQLTDNDRVAFRSAVILRIPKLVELSREGAFHVVISHFSEESSHIITELHSHPRSLFLYLKTHIELHLFGTLDLSNLRKDDTVNPLNGRQVKDHPEGVGDYLENISNFPKYMREKPIPVSDDLIELYLELLCQYEGSSVLKFLEMFDSYRVEHCLRLCQEYGIIDATAFLLERVGDVGKALSLTLSDLNDKFLELDAAVEAVVLDHRRVGSSHVEVFDSVLRTKEGSDIHNLLRACVGLCQRNTPRLNPAESEAHWFKLLDSFCDPLIDSNVEGAYESENYFGMLAGSADSQQDNDTYNKSSWKISKSRNGHILRKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYAPRSLACCICNCLLTKNSGSSGIRIFNCGHAIHLQCEVLEIEASSKGSSSGCPLCMPSKKSQQSRNKSIIATNGLVNKFSSRRQYPHGSTIHTHDNDLTENMYGQQQISRFEILSNLQKNQRFMQIENLPQLKLAPPAVYHEKVSKVANFLTGESSNNSSAMEKQSRNKQNRELRVKGSSIRFPLKSSIFGKEKTSKR* 1913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00291 1912 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Lapu10g00291 1912 Pfam Golgi CORVET complex core vacuolar protein 8 939 1122 IPR025941 -
Lapu10g00291 1912 ProSiteProfiles Zinc finger RING-type profile. 1721 1769 IPR001841 -
Lapu10g00291 1912 MobiDBLite consensus disorder prediction 284 299 - -
Lapu10g00291 1912 MobiDBLite consensus disorder prediction 1 91 - -
Lapu10g00291 1912 MobiDBLite consensus disorder prediction 34 83 - -
Lapu10g00291 1912 Pfam Region in Clathrin and VPS 1438 1507 IPR000547 GO:0006886|GO:0016192
Lapu10g00291 1912 ProSiteProfiles Trp-Asp (WD) repeats profile. 466 500 IPR001680 GO:0005515
Lapu10g00291 1912 SUPERFAMILY WD40 repeat-like 405 739 IPR036322 GO:0005515
Lapu10g00291 1912 MobiDBLite consensus disorder prediction 238 255 - -
Lapu10g00291 1912 SUPERFAMILY RING/U-box 1714 1770 - -
Lapu10g00291 1912 Coils Coil 319 346 - -
Lapu10g00291 1912 MobiDBLite consensus disorder prediction 159 177 - -
Lapu10g00291 1912 Gene3D - 381 540 IPR015943 GO:0005515
Lapu10g00291 1912 PANTHER VACUOLAR PROTEIN SORTING VPS41 242 1842 IPR045111 GO:0006623
Lapu10g00291 1912 CDD RING-H2 1721 1770 - -
Lapu10g00291 1912 MobiDBLite consensus disorder prediction 149 319 - -
Lapu10g00291 1912 MobiDBLite consensus disorder prediction 1867 1894 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00291 K20178 - gmx:100780869 3136.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00291 10 5210835 5226833 Lapu10g00291 10 5210835 5226833 ECH