Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00290 ATGGCAACTTTGACTGCTTCAAGTAACTTGATCTCTGGAAGTTCTCATGTTCACCATGGACCAACTGCATCATACGAGTCTAAAGCAGTGGCAATGGGACTTAAATCTCTAAAGCAGACCAATACTCATAGTGGACTGAGAATTTTGAACCCGGTGGATGAGCTACGTAACAGGACCCCAATTAAAACCAATGCAGTAAAAGCTACAAGGAAGGGACTTCAAGCCAAGAATGTCAAGCCAAAAGGTGTAATAATATGTGGCATGGATTTGATTTTTGTTGGTACAGAGGTGGGTCCATGGAGCAAAACCGGTGGGTTAGGAGATGTTCTTGGGGGTCTTCCACCAGCATTAGCAGGTTATGGACATCGAGTCATGACTATTGCGCCACGTTATGACCAATACAAAGATGCCTGGGACACAAGTGTTGTGGTTGAGCTGAAAGTAGGGGATAGAACTGAAAAGGTTCGCTACTTCCATTGCTATAAGAGGGGAGTTGATCGTGTCTTTGTGGATCACCCTTTGTTTCTTGCAAAGGTCTGGGGGAAAACCGGAACCAAACTTTATGGACCAACTACGGGAGATGATTACGAAGACAACCAACTACGTTTTAGCCTATTTTGCCAGGCAGCTTTGGAAGCACCAAGGGTTCTGAATCTCAATTCCAGTAAATATTTCTCTGGACCATATGGTGAAGATGTAATTTTCATCGCCAACGATTGGCACACAGCCCTTCTCTCCTGCTACTTGAAAACTATGTACCAGTCAGTAGGCATCTATAAGAATGCTCGGGTTGTTTTTTGTATCCACAACATTGCTTACCAGGGAAGATTTGCATTCACAGACTATGGACTTCTAAATCTCCCTGACCAATTCAAAAGCTCCTTTGACTTTATTGATGGGCATGTTAAACCAGTGATTGGAAGGAAAATCAATTGGATGAAAGCTGGAATTCTAGAATCGTGGTTTGTGGTAACTGTTAGTCCAAACTATGCTAAAGAACTAGTGTCAGGTCCAGACAAAGGAGTGGAACTGGACAACATCCTTCGCAAAAATAAAGATCGTTTAATTGGAATTGTGAATGGCATGGATGTTCAGGAGTGGAATCCATCCACTGACAAGTATATAGCAGTCAAATACGATGCTTCAACAGTTTTGGAAGCAAAGGCTCTTTTGAAAGAAGCCCTCCAAGCAGAAGTTGGATTGCCGGTGGACAGAAATATTCCTCTCATTGGTTTCATTGGTAGGCTTGAAGAGCAAAAAGGTTCCGATATTCTTGCAGAAGCCATTCCCCAATTTATCAAGGAGAATGTTCAGTTGGTAGCCCTTGGAACAGGAAAAAAACAAATGGAAAAACAGCTCGAGGAACTTGAAATATCATATCCTGACAAGGCCAGAGGAGTGGCAAAATTCAATGTTCCCCTAGCCCACATGATAATTGCTGGTGCTGATTTTATATTGGTTCCTAGCAGATTTGAGCCTTGTGGTCTTATTCAGTTACAAGCTATGCGCTATGGATCAGTACCTATTGTTTCCTCAACCGGTGGATTAGTTGACACTGTCAAAGAAGGCTTCACTGGATTTCATATGGGTTCTTTCAGTGTTGAATGTGAAGCTGTGGATGCTGCTGATGTAGATGCTATAGCAAAGACTGTCAAAAGGGCCCTTGCAGTCTATGGAACTCCAGCTTTCACAGAAATGATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGAAGTGCTGCTAAGCTTGGGAGTTCCTGGCAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTGGCAACTCCATAA 1851 0.4306 MATLTASSNLISGSSHVHHGPTASYESKAVAMGLKSLKQTNTHSGLRILNPVDELRNRTPIKTNAVKATRKGLQAKNVKPKGVIICGMDLIFVGTEVGPWSKTGGLGDVLGGLPPALAGYGHRVMTIAPRYDQYKDAWDTSVVVELKVGDRTEKVRYFHCYKRGVDRVFVDHPLFLAKVWGKTGTKLYGPTTGDDYEDNQLRFSLFCQAALEAPRVLNLNSSKYFSGPYGEDVIFIANDWHTALLSCYLKTMYQSVGIYKNARVVFCIHNIAYQGRFAFTDYGLLNLPDQFKSSFDFIDGHVKPVIGRKINWMKAGILESWFVVTVSPNYAKELVSGPDKGVELDNILRKNKDRLIGIVNGMDVQEWNPSTDKYIAVKYDASTVLEAKALLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILAEAIPQFIKENVQLVALGTGKKQMEKQLEELEISYPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGLIQLQAMRYGSVPIVSSTGGLVDTVKEGFTGFHMGSFSVECEAVDAADVDAIAKTVKRALAVYGTPAFTEMIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAKENVATP* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00290 616 Gene3D Glycogen Phosphorylase B; 363 573 - -
Lapu10g00290 616 Pfam Starch synthase catalytic domain 91 350 IPR013534 -
Lapu10g00290 616 Gene3D Glycogen Phosphorylase B; 90 582 - -
Lapu10g00290 616 MobiDBLite consensus disorder prediction 1 22 - -
Lapu10g00290 616 FunFam Starch synthase, chloroplastic/amyloplastic 368 573 - -
Lapu10g00290 616 CDD GT5_Glycogen_synthase_DULL1-like 91 590 - -
Lapu10g00290 616 NCBIfam glycogen/starch synthase, ADP-glucose type 88 589 IPR011835 GO:0004373
Lapu10g00290 616 MobiDBLite consensus disorder prediction 595 616 - -
Lapu10g00290 616 Pfam Glycosyl transferases group 1 407 531 IPR001296 GO:0016757
Lapu10g00290 616 MobiDBLite consensus disorder prediction 1 21 - -
Lapu10g00290 616 FunFam Starch synthase, chloroplastic/amyloplastic 89 367 - -
Lapu10g00290 616 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 67 594 - -
Lapu10g00290 616 Hamap Glycogen synthase [glgA]. 88 591 IPR011835 GO:0004373
Lapu10g00290 616 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 83 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00290 Lapu-Chr10 5197326 5202341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00290 1 616 Glycosyltransferase AT1G32900 70.598 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00290 K13679 - gmx:100817424 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00290 10 5197326 5202341 Lapu10g00290 10 5197326 5202341 ECH