Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00254 ATGCCTCCTCAAATGCAGCCCTTCGCCGATTTCCTCCGCACCGCGCCGCAGGAAGACGGCGGCGAGAGGCAGACCCCACCGCTGAACCGAACCGTGAAGAAGACGCTGGTAGTAGAAGAGTCCTCCTTGGACAATCCGGATCTGGGCCCGTTCCTTCTGAAGATGGCCCGAGAAACAATAGCGTCCGGTGAGAGCCCGGTGAAGGCCCTGGACTTCGCCATTCGGGCCTCCAGGTCATTCGAGCGGTGTGCGGGCCCGGGCCTGGAGCTTGCCACGTGTCTCCACGTTGTTGCTGCAATCTACAGCAGTTTGGGGCGGTTGGATGAGGCGGTTGAGGCTTTGGAACGGTCCATTTTGTTGTTGGAAGGGGAAAACGAGTCGGGTCATGCCATGGCCCAGTTCTCCGGGTTCATGCAACTTGGTGACACGTATTCCATGATTGGTCAGTTGGATAGGGCCATTTCGTGTTACGAGTCGGGTTTGAAGATCCAAATGGATGTTCTGGGTGAGTCCGACCCAAGAATTGCTGAGACTTGTAGGTACTTAGCTGAAGCCCATGTCCAAGCCATGCAATTTGAGCAGGCAGAGAACTTCTGCAAGAAGACCCTCGAAATTCACAGGGAGCACTGCTCTCCTGCTTCCCTTACCGAAGCAACCGACAGGCGGCTAATGGCCCTTATATGTGAGGCCAAGGGAGATTATGAACCAGCTCTTGAGCACCTTGTCCTAGCTAGCATGTCAATGATCGCCAATGCACAAGATAATGAGGTTGCAGCAATTGATGTTAGCATTGGAGATATTTACATGTCACTCTGTCGTTTTGATGAGGCTGTTTTCGCCTATCAGAAAGCACTAACAGTGTTCAAATCCACCAAAGGTGAAAGCCACAGTTCTGTGGCGTTAGTGTTCATTCGCCTTGCAGACCTTTATTACAGGACAGGAAAATTAAGAGAGTCAAAATCATACTGCGAAAATGCTTTAAGAATATACAGTAAGCCTGTGGTTGGAACAACGGCGGGGGAGATTGCAAGCGGGTTGACTGAAATCTCTGCCATCTATGAAGCTCTAAATGAACCTGAGGAGGCATTGAAGCTGCTGCAAAAGGCAGTGAAATTGTTGCAGGATATCCCTGGACAATATAGGACAGTGGCAGGAATAGAAGCTCAAATGGGAGTGATGTTCTACATGGTTGGGAAGTACCTGGAGGCATGGAAGTCTTTTGAGAATGCTATCACCAAGCTGAGAGCAAGTGGGGAGAAGAAATCTACCTTTTTTGGAGTTGTATTGAACCAGATGGGGCTGGCATGTGTGCAACTGTATAAAATAGGGGATGCTGCCAAACATTTTGAAGAAGCAAGAGAGATATTGGAGAGAGAATGTGGTACATATCATTCAGACACTCTTGGAGTGTATAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGAGTTGAAGATGCCATTGAGATATTGGAATACATACTAAAGATGAGAGAAGAAAAACTTGGAACTGCTAATCCAGATGTTGATGATGAAAAGAAGCGACTATTTGAGCTTTTGAAAGAAGTAGGAAGAGTTCGGAATAGAAAGGGAAAAAAATCTCTTGAAAACCTTATAGATTCCAATTCCTTAAAGATGAAGAAGGAAGGAAAAAAGAGATGGGCTGTTTTTGGCTTGAGAACTTAA 1686 0.4757 MPPQMQPFADFLRTAPQEDGGERQTPPLNRTVKKTLVVEESSLDNPDLGPFLLKMARETIASGESPVKALDFAIRASRSFERCAGPGLELATCLHVVAAIYSSLGRLDEAVEALERSILLLEGENESGHAMAQFSGFMQLGDTYSMIGQLDRAISCYESGLKIQMDVLGESDPRIAETCRYLAEAHVQAMQFEQAENFCKKTLEIHREHCSPASLTEATDRRLMALICEAKGDYEPALEHLVLASMSMIANAQDNEVAAIDVSIGDIYMSLCRFDEAVFAYQKALTVFKSTKGESHSSVALVFIRLADLYYRTGKLRESKSYCENALRIYSKPVVGTTAGEIASGLTEISAIYEALNEPEEALKLLQKAVKLLQDIPGQYRTVAGIEAQMGVMFYMVGKYLEAWKSFENAITKLRASGEKKSTFFGVVLNQMGLACVQLYKIGDAAKHFEEAREILERECGTYHSDTLGVYSNLAATYDAMGRVEDAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKEVGRVRNRKGKKSLENLIDSNSLKMKKEGKKRWAVFGLRT* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00254 561 Pfam Tetratricopeptide repeat 428 500 - -
Lapu10g00254 561 Pfam Tetratricopeptide repeat 257 331 - -
Lapu10g00254 561 Gene3D Tetratricopeptide repeat domain 87 244 IPR011990 GO:0005515
Lapu10g00254 561 Gene3D Tetratricopeptide repeat domain 426 528 IPR011990 GO:0005515
Lapu10g00254 561 MobiDBLite consensus disorder prediction 1 29 - -
Lapu10g00254 561 Coils Coil 104 124 - -
Lapu10g00254 561 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 32 543 - -
Lapu10g00254 561 ProSiteProfiles TPR repeat profile. 343 376 IPR019734 GO:0005515
Lapu10g00254 561 Pfam MalT-like TPR region 95 242 IPR041617 -
Lapu10g00254 561 ProSiteProfiles TPR repeat profile. 258 291 IPR019734 GO:0005515
Lapu10g00254 561 ProSiteProfiles TPR repeat profile. 468 501 IPR019734 GO:0005515
Lapu10g00254 561 SUPERFAMILY TPR-like 91 504 IPR011990 GO:0005515
Lapu10g00254 561 SMART tpr_5 91 124 IPR019734 GO:0005515
Lapu10g00254 561 SMART tpr_5 134 167 IPR019734 GO:0005515
Lapu10g00254 561 SMART tpr_5 258 291 IPR019734 GO:0005515
Lapu10g00254 561 SMART tpr_5 300 333 IPR019734 GO:0005515
Lapu10g00254 561 SMART tpr_5 176 209 IPR019734 GO:0005515
Lapu10g00254 561 SMART tpr_5 343 376 IPR019734 GO:0005515
Lapu10g00254 561 SMART tpr_5 384 417 IPR019734 GO:0005515
Lapu10g00254 561 SMART tpr_5 468 501 IPR019734 GO:0005515
Lapu10g00254 561 SMART tpr_5 426 459 IPR019734 GO:0005515
Lapu10g00254 561 Gene3D Tetratricopeptide repeat domain 245 421 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00254 Lapu-Chr10 4626732 4632143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00254 97 303 Glycosyltransferase AT3G04240 24.312 1.99e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00254 - - gmx:100794697 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00254 10 4626732 4632143 Lapu10g00254 10 4626732 4632143 ECH