Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00162 ATGGATATGGAGAGAAAGAGCCAACAGCTTCTATCCAAGATTGCCACCAATGACAAACATGGAGAGAATTCTCCATACTTTGATGGGTGGAAAGCATATGAGAGAAACCCATTTCACCCTACAAAAAATCCTCAAGGTGTTATCCAGATGGGTCTTGCAGAAAATCAACTATGCTTTGATCTGATTGAAGAGTGGATTCTGAATAATCCCAAGGCTTCCATTTGCACTCCTGAGGGAGTGCATCAGTTCAAAAACATTGCCAACTTTCAGGACTATCATGGGTTGCAAGAGTTCAGAAATGGTATTGCAAATTGGATGTCGAAAGTGAGAGGAGGTAGGGTCAAATTTGATCCTGACCGTATATTGATGAGTGGAGGAGCAACAGGGGCAAACGAGCAAATCATGTTCTGCTTGGCTGATCCTGGTGATGCCTTTCTGATTCCGACCCCATTTTATCCAGGATTCGTCCGTGATTTGTGTTGGAGAACCCAGGTGCAATTAATACCTGTCCACTGTCATAGCTCCAACAACTTCATGATAACAATAGAAGCTCTTGAAGAAGCATACAAAAAAGCCAAAGAGGACAACATCAACGTAAAGGGTTTGATCATAACAAACCCCTCTAACCCTTTGGGCACTACCTTAGACAAGGACACATTGAAGAGCCTGGTGAGTTTCATCAACGAGAAAAACATTCACTTGGTTTGTGATGAAATCTATGCAGCAACTGTGTTCAGTAGTTCCCCCAGTTATGTAAGCGTGGCTGAAGTGATCCAGGAAATGGAACATTGCAACCATGACCTAGTTCATGTCATTTATAGTTTGTCCAAAGACATGGGGTTCCCTGGTTTCAGAGTTGGCATAGTTTATTCATTCAATGATGAAGTGGTGAGATGTGGAAGGAAAATGTCAAGCTTCGGCTTAATCTCCTCGCAAACTCAACACATGCTGGCTTCGATGCTTTCGGATGAAAAGTTTGTAACGAAGTTTCTTTCTGAGAATTCAAGAAGATTAGAAGAAAGGCACGAGAAGTTCATGAAGGGGCTTGAAGAGGTTAACATTACTCGTTTTCCAAGCAATGCAGGCCTTTTCTTCTGGATGAACTTGAAGAGTTTATTGAAGGAACCAACGTTTGAAGCTGAGTTGAAGCTATGGCGTGTGATTATTCACGAGGTGAAGCTCAATGTGTCACCAGGCTCTTCTTTCAACTGTTCTGAGCCTGGTTGGTTTAGGGTTTGCTTTGCCAACATGGATGATGAAACAGTGGATGTTGCACTCAACAGGATTCGTGAACTCGTGGGGAGAGAAACAAAGAAGCCCGTGGGAATGAAACGTTGGCAACCGAATCTTAGACTCAGTTTTTCTTCGAGGATGTTTGATGAGAGTGTTATGTCTCCTCATTCCCCTATTAAATCACCTCTTGTTCAAGCCACTTGA 1437 0.428 MDMERKSQQLLSKIATNDKHGENSPYFDGWKAYERNPFHPTKNPQGVIQMGLAENQLCFDLIEEWILNNPKASICTPEGVHQFKNIANFQDYHGLQEFRNGIANWMSKVRGGRVKFDPDRILMSGGATGANEQIMFCLADPGDAFLIPTPFYPGFVRDLCWRTQVQLIPVHCHSSNNFMITIEALEEAYKKAKEDNINVKGLIITNPSNPLGTTLDKDTLKSLVSFINEKNIHLVCDEIYAATVFSSSPSYVSVAEVIQEMEHCNHDLVHVIYSLSKDMGFPGFRVGIVYSFNDEVVRCGRKMSSFGLISSQTQHMLASMLSDEKFVTKFLSENSRRLEERHEKFMKGLEEVNITRFPSNAGLFFWMNLKSLLKEPTFEAELKLWRVIIHEVKLNVSPGSSFNCSEPGWFRVCFANMDDETVDVALNRIRELVGRETKKPVGMKRWQPNLRLSFSSRMFDESVMSPHSPIKSPLVQAT* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00162 478 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 9 433 - -
Lapu10g00162 478 Coils Coil 175 202 - -
Lapu10g00162 478 Gene3D Aspartate Aminotransferase, domain 1 36 428 IPR015422 GO:0003824
Lapu10g00162 478 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 274 287 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lapu10g00162 478 Gene3D - 70 323 IPR015421 GO:0003824
Lapu10g00162 478 Pfam Aminotransferase class I and II 48 429 IPR004839 GO:0009058|GO:0030170
Lapu10g00162 478 CDD AAT_like 88 431 - -
Lapu10g00162 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 268 292 - -
Lapu10g00162 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Lapu10g00162 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Lapu10g00162 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Lapu10g00162 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Lapu10g00162 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Lapu10g00162 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Lapu10g00162 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 300 323 - -
Lapu10g00162 478 SUPERFAMILY PLP-dependent transferases 16 434 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00162 Lapu-Chr10 3412117 3415650 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00162 K20772 - gmx:100813347 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00162 10 3412117 3415650 Lapu10g00162 10 3412117 3415650 ECH
Lapu1g01509 1 27879395 27882896 Lapu10g00162 10 3412117 3415650 PCT