Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00132 ATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTAAGAGTTGAACTGCCTGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTGTCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTGAATGTGTTTGAGGTGTTTTTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTGAATGGGGAAGCTGCAGCTTTACTTATGCGTGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAAGCTGAGGACATAGGAGCTGCAACAGAAGAGCAATCTAGTGATGAGGAGCTAACTGAAGGTGAATATGATTCTGGTGATGAACAGGTTGCTGGTAAAGCAGACCCCTAG 552 0.4239 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRATYEQRVKEYCEKYAKAEDIGAATEEQSSDEELTEGEYDSGDEQVAGKADP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00132 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Lapu10g00132 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Lapu10g00132 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Lapu10g00132 183 MobiDBLite consensus disorder prediction 156 171 - -
Lapu10g00132 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lapu10g00132 183 CDD UBCc 7 143 IPR000608 -
Lapu10g00132 183 Gene3D Ubiquitin Conjugating Enzyme 1 160 IPR016135 -
Lapu10g00132 183 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Lapu10g00132 183 Coils Coil 132 152 - -
Lapu10g00132 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Lapu10g00132 183 SMART ubc_7 4 148 - -
Lapu10g00132 183 MobiDBLite consensus disorder prediction 151 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00132 Lapu-Chr10 3047044 3049982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00132 3 115 Miscellaneous Gene Families AT3G17000 23.140 3.61e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00132 K10576 - gmx:548025 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00132 10 3047044 3049982 Lapu10g00132 10 3047044 3049982 ECH
Lapu1g01534 1 28143755 28146743 Lapu10g00132 10 3047044 3049982 PCT