Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00112 ATGATTGTGGGAAGGGCTTTTCAGGTCCTCTGTTTTTACTATCCAATGGAGATTGTAGATGATGAAAAAGAATCATCAAATAGTGTCAATGAAGTAGAAGACACCAATTCTGCACTTATTTGTGGCCTTCCAGATGATATCTCTCTTATGTGCCTAGCTAGAGTTCCTAGAAAATATCATCCAATCATGAAGTGTGTCTCAAAGAAATGGAGGGACTTAATTTGCAATGAAGAGTGGTGCACTTATCGTCGAAAGCACAAACTGGATGAAACCTGGATTTATGCTCTGTGCAGGGACAAATCAAATGAGATTTTCTGTTATGTTTTGGATCCAACCGCCTCAGTAAGATATTGGAAGCTTGTTGAAGGTCTTCCACCTCACATCACAAAAAGAAAAGGCATGGGTTTTGAAGCTTTGGGAAATAAGCTATTCTTATTGGGTGGTTGTAGCTGGTCAATAGATTGTACTGATGAGGTTTATTCATATGATGCTTCCTCAAACTGCTGGGTTCAAGCTACTTCCTTGTCAGCTCCTAGATGCTTCTTTGCTTGTGAAGTTGTGGATGAAAAACTATATGCTATTGGAGGATTAGTTTCAAATCCATGCTGTTCTCATTCTTGGGATACTTTTGACCCTCTGACAAATTGTTGGACTTCTCAGAGAGATATTGTTATTATGTCTGATGCTGAAGATTCAGTGGTTCTTGATGGGAAGATATACGTCCGATTATCCAGATATCCTGTAACTCCTCATGCATTTGCTATTGTATATGAACCATCAAGTGGCACATGGCAGTATGCAGATGCTGACATGGTCTCAGGGTGGACAGGTCCTGCAGTTGTTGTGGATGACACCCTTTATGTCTTGGATCAAACTTTGGGAACTAGGTTAATGATGTGGCACAAAGAGAAACGCAAGTGGATACCGGTTGGAAAACTATCACCACTGCTTACTAGACCACCTTGTCAGCCTGTTGCAGTTGGTAGAAGCATTTTCATTGTTGGCAAAATGCTTAGCACTGTGGTTGTTGATGTTGGTGATTTGGGGAATGAGGGCCAGGTGATGATGGGTTCTTCTATACCAGGATTGTCATCTGATGTCACTGTAATAAGTTGTAAATGCTTGTCAATCTAA 1134 0.4074 MIVGRAFQVLCFYYPMEIVDDEKESSNSVNEVEDTNSALICGLPDDISLMCLARVPRKYHPIMKCVSKKWRDLICNEEWCTYRRKHKLDETWIYALCRDKSNEIFCYVLDPTASVRYWKLVEGLPPHITKRKGMGFEALGNKLFLLGGCSWSIDCTDEVYSYDASSNCWVQATSLSAPRCFFACEVVDEKLYAIGGLVSNPCCSHSWDTFDPLTNCWTSQRDIVIMSDAEDSVVLDGKIYVRLSRYPVTPHAFAIVYEPSSGTWQYADADMVSGWTGPAVVVDDTLYVLDQTLGTRLMMWHKEKRKWIPVGKLSPLLTRPPCQPVAVGRSIFIVGKMLSTVVVDVGDLGNEGQVMMGSSIPGLSSDVTVISCKCLSI* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00112 377 SUPERFAMILY F-box domain 39 79 IPR036047 GO:0005515
Lapu10g00112 377 PANTHER OS02G0202900 PROTEIN 22 347 IPR045887 -
Lapu10g00112 377 Pfam Kelch motif 178 219 IPR006652 GO:0005515
Lapu10g00112 377 Pfam Kelch motif 131 176 IPR006652 GO:0005515
Lapu10g00112 377 SUPERFAMILY Kelch motif 98 338 IPR015915 GO:0005515
Lapu10g00112 377 CDD F-box_AtAFR-like 39 83 - -
Lapu10g00112 377 SMART kelc_smart 190 236 IPR006652 GO:0005515
Lapu10g00112 377 SMART kelc_smart 142 189 IPR006652 GO:0005515
Lapu10g00112 377 Pfam F-box domain 41 76 IPR001810 GO:0005515
Lapu10g00112 377 SMART fbox_2 43 83 IPR001810 GO:0005515
Lapu10g00112 377 Gene3D - 83 350 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00112 Lapu-Chr10 2774616 2777804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00112 43 318 Miscellaneous Gene Families AT4G33900 26.910 4.01e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00112 - - pvu:PHAVU_010G098100g 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00112 10 2774616 2777804 Lapu10g00112 10 2774616 2777804 ECH