Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00089 ATGGCAAAAGCAGGTCTAAATGCCTACACAAGGATGCTAGCTAAGAAGTTCCCTCATTTTTGCATAAATTGTATATGCCCTGGCTCTGTCAAGACTGATATAAACCACAACCAAGGTTTGTTAAGCATTGATGAAGGTGTTGAAAATCCTGTTAGGCTAGCACTGTTGCCTGATGATGGTCCTTCTGTCAACATGGGAGAAGAAGCAACAAGATATGCAGTGGTGACAGGAGCTAACAAGGGAATTGGTTATGGGATATGCAAGAAACTGGCTTTGAATGGAGTTGTGGTGGTGCTAACAGCTAGAAATGAGAAGAGGGGTTTGGAAGCAGTGGAAAGATTGAAGGAGTTTGGTCTCTCAGACCTTCTAGTTTTTCATCAACTTGATGTCACTGATCCTCCTAGTGTTGCTGCTTTGGCTCAATTCATCAAAACCAGATTTGGAAGACTTGACATCTTGGTGAACAATGCAGGTGTTCCTGGGGGACTAGTAAATGGAGAGAATGTTCTTAGAAAGAAAAGGGGCGAAATATCAGATTGGAGTATAATAGTACCACAGAATTATGAGTTGGCTGAAGAATGTGTTGAAATAAACTTTTTTGGTGCAGAAAGAGTGACAGAAGCTCTTCTCCCCCTCCTTGAACGATCAACTTCACCAAGGATTGTCAATGTCTCCTCTAGAAGAGGAGTCATGAAGAATATACCAAATGATTGGGCAAGAGGAGTGTTGAGTGACATTGAAAACCTTACAAACAAAAAGATTGAAGTGGTGCTGAGGGAGTTTCTGAAGGATTACAAGACAGGATCATTGGAAGCCAAGAACTGGCCACCTGTTCTTTCTGGCTACACCATGTCAAAAACAGCCTTAAATTCGTACACAAGAATGTTGGCCAAGAAGTTCCCTCGTTTTCGCATAAATTGTTTGTGCCCTGACTTTGTCAAGACTGATCTAAACCAGAATGTAGGGTTTTTAACCATTGATGAAGGTGCTGAATGTCCTGTCAGACTAGCTTTGTTGCCAGATAATGGTCCTTCTGGTCTCTTCTTCTTAAAGAATGAAGTACTTTCCTTTTTCTAA 1077 0.4141 MAKAGLNAYTRMLAKKFPHFCINCICPGSVKTDINHNQGLLSIDEGVENPVRLALLPDDGPSVNMGEEATRYAVVTGANKGIGYGICKKLALNGVVVVLTARNEKRGLEAVERLKEFGLSDLLVFHQLDVTDPPSVAALAQFIKTRFGRLDILVNNAGVPGGLVNGENVLRKKRGEISDWSIIVPQNYELAEECVEINFFGAERVTEALLPLLERSTSPRIVNVSSRRGVMKNIPNDWARGVLSDIENLTNKKIEVVLREFLKDYKTGSLEAKNWPPVLSGYTMSKTALNSYTRMLAKKFPRFRINCLCPDFVKTDLNQNVGFLTIDEGAECPVRLALLPDNGPSGLFFLKNEVLSFF* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00089 358 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 2 63 - -
Lapu10g00089 358 Pfam short chain dehydrogenase 72 233 IPR002347 -
Lapu10g00089 358 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 269 297 IPR020904 GO:0016491
Lapu10g00089 358 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 159 IPR002347 -
Lapu10g00089 358 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 219 227 IPR002347 -
Lapu10g00089 358 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 282 301 IPR002347 -
Lapu10g00089 358 CDD carb_red_PTCR-like_SDR_c 71 357 IPR045313 GO:0016616
Lapu10g00089 358 FunFam (+)-neomenthol dehydrogenase 66 357 - -
Lapu10g00089 358 PRINTS Glucose/ribitol dehydrogenase family signature 282 301 IPR002347 -
Lapu10g00089 358 PRINTS Glucose/ribitol dehydrogenase family signature 72 89 IPR002347 -
Lapu10g00089 358 PRINTS Glucose/ribitol dehydrogenase family signature 148 159 IPR002347 -
Lapu10g00089 358 PRINTS Glucose/ribitol dehydrogenase family signature 301 318 IPR002347 -
Lapu10g00089 358 PRINTS Glucose/ribitol dehydrogenase family signature 213 229 IPR002347 -
Lapu10g00089 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 71 342 IPR036291 -
Lapu10g00089 358 Gene3D - 68 357 - -
Lapu10g00089 358 Gene3D - 1 67 - -
Lapu10g00089 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 61 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00089 Lapu-Chr10 2461710 2468816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00089 74 322 Acyl Lipid Metabolism Gene Families AT1G24360 22.619 4.36e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00089 K15095 - gmx:100802560 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00089 10 2461710 2468816 Lapu10g00089 10 2461710 2468816 ECH
Lapu1g01578 1 28583599 28585528 Lapu10g00089 10 2461710 2468816 PCT