Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00088 ATGTGTTCACGTCTTGTTTTTCTTCTTCTGCTGGTAGTCATCTCTGCATCACATTCCAATGCATACCCTTTATCAACGCATAACAGATGGATCATAGATGAAGCCACAGGACAACGTGCCAAGTTGGTCTGTGCCAATTGGGCTGGACACCTCCAACCAATGATCCCTGAGGGTCTTGACAAAAGGCCCTTGAAGGAGATCGTTGGTGAGCTTGTGAAGCAACACTTCAACTGCGTGCGTCTCACCTATGCAATCTACATGTGGACACGCTATGGACATGACAACGTGAATGCCACCTTTGCCTCTTTGGATGCACCAGAGGTGATCGAAGGTATTGCCAGGAACAACCCTTCTGTGTTGTCCATGACACATATTGAGGCCTTTCATGCAGTCGTTCATGAACTTGGGGTTCAGAATGTGCAAGTCTTGCTCGATAACCATGTGAGTGAGCCAAAGTGGTGCTGTGATGATGATGATGAAAATGGCTTCTTCCATGATAGACATTTTAATCCCCAGGAATGGCTGCAAGGCCTTACTTTGGCAGCCAAACACTTCAGTGGAAATCATGCCGTTGTGGCAATGAGTTTGAGGAATGAATTGCACGGTCCACGCCAAAATTTGCAGGATTGGTACAGGTACATGAGCCAAGGAGCACTAGCTATTCACAAGACAAATCCAAATGTGCTTGTGCTTATCTCAGGTTTGAACTATGACACTGAGTTGCAGTTTTTAAAGAGTAAACCATTGAAGGTAGACTTGGGTAAGAAAATGGTGTTTGAGACACATTTGTACTCATGGTCTGGAATTGGAACACTCAAATTGAAAGAGATATGGACAAAGCAACCATTGAATAGGGTATGTGCCAACAGCATTAAAGGGTTAGACTACAGAGCTGGATTCCTTACCACTGGCAAGAATGCAGCTCCTTTGATTTTTACGGAGTTTGGGTTTAACGAGGAAGGTTCTTCAGTGGAAGACAACAGGTTCTTGACATGCCTTCAAACCTATCTTCTGGGAAAAGATATGGACTGGGGATTGTGGGCTTTTCAGGGTAGCTACTATGTAAAGAAAGATCAGGTCCAAATTGAGGAGTCATTTGGTGTAATGGATGAAACCTGGCATCACCTTAGATATCCCAACTTCACTGATAAGTTCCAACTTTTGCAAAGGAAGAATCTAGTGAATGAGAAGAATGAACTTGAACTTGGAAGCTGTGAGACCAAAAACAGATGGGTTCATGGAGGGAATGAGAGTGAAATCCTTTTACATGGCAGTAAGAAGTGCTTAACAGCAGCTGGTGAAGGGGTTCCAGTTGTAGTTTCTGATTGTCAAAGGAAGAACAGTTCTTGGAAATCTGTATCTCTGTCTAAACTTCACTTGGCTACTATGAATCAACATGAGGAACAACTTTGCTTGCAGAAGGATTCTAACTCATCCAGCATCGTGACTTCGAAGTGTATCTGCATAAAAGATGATTCTCTATGTCTTGATGATCCTCAAAGCCAGTGGTTCCAGCTTGTTGCCACCAATGTGTAG 1536 0.4355 MCSRLVFLLLLVVISASHSNAYPLSTHNRWIIDEATGQRAKLVCANWAGHLQPMIPEGLDKRPLKEIVGELVKQHFNCVRLTYAIYMWTRYGHDNVNATFASLDAPEVIEGIARNNPSVLSMTHIEAFHAVVHELGVQNVQVLLDNHVSEPKWCCDDDDENGFFHDRHFNPQEWLQGLTLAAKHFSGNHAVVAMSLRNELHGPRQNLQDWYRYMSQGALAIHKTNPNVLVLISGLNYDTELQFLKSKPLKVDLGKKMVFETHLYSWSGIGTLKLKEIWTKQPLNRVCANSIKGLDYRAGFLTTGKNAAPLIFTEFGFNEEGSSVEDNRFLTCLQTYLLGKDMDWGLWAFQGSYYVKKDQVQIEESFGVMDETWHHLRYPNFTDKFQLLQRKNLVNEKNELELGSCETKNRWVHGGNESEILLHGSKKCLTAAGEGVPVVVSDCQRKNSSWKSVSLSKLHLATMNQHEEQLCLQKDSNSSSIVTSKCICIKDDSLCLDDPQSQWFQLVATNV* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00088 511 Gene3D Glycosidases 21 390 - -
Lapu10g00088 511 Pfam Cellulase (glycosyl hydrolase family 5) 63 348 IPR001547 GO:0004553|GO:0071704
Lapu10g00088 511 SUPERFAMILY (Trans)glycosidases 21 376 IPR017853 -
Lapu10g00088 511 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 10 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00088 Lapu-Chr10 2454280 2456306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00088 21 507 Glycoside Hydrolase AT1G13130 37.791 2.63e-127 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00088 K01179 - adu:110276660 571.622