Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00087 ATGGGTATGGCAGATGCAAAACAAAGATATGCTGTTGTGACAGGTGCAAACAAAGGGATAGGATTGGAGACTGTGAAAGGGCTGGCCTCAAATGGAATCAAGGTGGTGCTCACAGCCAGGGATGTGAAGAGGGGTTATCAAGCTGTTGAGGAGTTAAAGAAAGAATTTGGCTTTTCTGGCCTTGTGGTGTTTCACCAGCTTGATGTCACTGACCCTGCTAGTATTGCATCTTTGGTTGAGTTTGTTAAGAACCGGTTTGGGAGACTTGATATATTGGTGAACAATGCAGGAATCAATGGGTTCAATACAGATGGCATGGTGCCATCAAAAATTAACTGGAAGGAGCTACCTCAAACTTGTGAGATGGCCAAAAAATGCCTAAGAACAAACTACTATGGTGCTAAGGAAACCACTGAGGCATTTCTTCCCCTTCTTCAGTTATCCAATTTACCTATGATTGTTAATGTTTCCTCTGAAGCAGGACTTTTAAAGTACATATCAAATGGATGGGCTAGGAGGGTGCTTGATGACACTGAAAATCTCAGTGAAGAGCTAATAGATGAGGTGCTGAAGGAGTACATGAAAGACTTGAAAGAAGGTTCACTAGAAAACAAAGGGTGGCCAACCTACCTCTCAGCATATATGGTCTCAAAAGCAGCCATGAATTCATACACAAGGCTTCTGGCTTATAGACACCCTAAATTGTGCATCAATTGTGTCTGTCCTGGTTTTGTTAAAACAGATATTAACAAAAATACTGGCATCTTATCTGTTGAAAATGGTGCAGCTAGTGTTGTGAGACTAGCACTCTTGCCTAATGGTTCCCCTTCTGGCCACTTCTTTACTAGACAAGAAGTTTCAAGCTTTTGA 870 0.4184 MGMADAKQRYAVVTGANKGIGLETVKGLASNGIKVVLTARDVKRGYQAVEELKKEFGFSGLVVFHQLDVTDPASIASLVEFVKNRFGRLDILVNNAGINGFNTDGMVPSKINWKELPQTCEMAKKCLRTNYYGAKETTEAFLPLLQLSNLPMIVNVSSEAGLLKYISNGWARRVLDDTENLSEELIDEVLKEYMKDLKEGSLENKGWPTYLSAYMVSKAAMNSYTRLLAYRHPKLCINCVCPGFVKTDINKNTGILSVENGAASVVRLALLPNGSPSGHFFTRQEVSSF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00087 289 Gene3D - 3 289 - -
Lapu10g00087 289 PRINTS Glucose/ribitol dehydrogenase family signature 214 233 IPR002347 -
Lapu10g00087 289 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Lapu10g00087 289 PRINTS Glucose/ribitol dehydrogenase family signature 87 98 IPR002347 -
Lapu10g00087 289 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Lapu10g00087 289 PRINTS Glucose/ribitol dehydrogenase family signature 233 250 IPR002347 -
Lapu10g00087 289 PRINTS Glucose/ribitol dehydrogenase family signature 276 289 IPR002347 -
Lapu10g00087 289 FunFam (+)-neomenthol dehydrogenase 4 289 - -
Lapu10g00087 289 Pfam Enoyl-(Acyl carrier protein) reductase 204 253 - -
Lapu10g00087 289 CDD carb_red_PTCR-like_SDR_c 9 289 IPR045313 GO:0016616
Lapu10g00087 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 214 233 IPR002347 -
Lapu10g00087 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 IPR002347 -
Lapu10g00087 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
Lapu10g00087 289 Pfam short chain dehydrogenase 10 166 IPR002347 -
Lapu10g00087 289 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 275 IPR036291 -
Lapu10g00087 289 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 9 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00087 Lapu-Chr10 2444330 2446908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00087 4 251 Acyl Lipid Metabolism Gene Families AT1G63380 26.482 3.96e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00087 K15095 - gmx:111064653 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00087 10 2444330 2446908 Lapu10g00087 10 2444330 2446908 ECH
Lapu10g00087 10 2444330 2446908 Lapu1g01578 1 28583599 28585528 PCT