Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00086 ATGGGAGAAGCAACAGAAAGGTATGCAGTTGTGACAGGAGCAAATAAAGGAATTGGATTACAGATAGTTACGCAGTTAGCTTCAGCTGGGATCAAGGTGGTGCTCACAGCAAGAAACGAGGAGAGGGGTCTGCATGCACTGGAAACAATCAAAGCCTCAGGTTTATCTCACCTTGTACTGTTTCATCAGGTGGATGTGGCTGATGCAACAAGTGTAGCTTCTCTGGCTCATTTTATCAAATCTGAATTTGGGAAACTTGATATTCTGGAAAATTGTACAATGCAGGTTAACAATGCAGGGATTGGGGGAGCAGAAATTAAAGACACTGATTTATTGCCTTCAGTCCTCTTGAACCGTGGGGTTGTATCGGAAGAAGATGGAACAAAGGCAATCACTGAAACATACGAGTTAGCTGAAGAATGCTTGAAAATAAACTACTATGGCACTAAAATAACTGTAGAATCACTTATGCCACTCCTCCAATTATCTGATTCACCAAGAATTGTGAATGTATCATCCAGTATGGGGCAGTTAGAGAGTTTCCCAAAAGGATCATGGGCCAGAGGAGTCTTAACTGATGTTGATAACCTCACTGAAGAGAAAGTGGATGAAATATTGAAGAAGTTTCTCACAGATTACCAAGAAGGTTCATTGGAGAGTAAAGGATGGCCTAGGTTTCTAGGTGCCTATAAACTCTCTAAAGCTGCTATGAATGGGTACACTAGGATCCTTGCTAAGAAATACCCTTCATTCTGCATCAATTGTGTTTGCCCTGGTTATGTGAAGACAGATATAACAGCCGACACTGGCATCCTAACAGTTGAAGAAGGTGCTGCTAGTCCTGTGAGGCTAGCACTGCTTCCCAGTGGCTCTCCATCTGGCCTCTTCTATTACAGAAGTGATGTGGCTTCCTTTTGA 918 0.4259 MGEATERYAVVTGANKGIGLQIVTQLASAGIKVVLTARNEERGLHALETIKASGLSHLVLFHQVDVADATSVASLAHFIKSEFGKLDILENCTMQVNNAGIGGAEIKDTDLLPSVLLNRGVVSEEDGTKAITETYELAEECLKINYYGTKITVESLMPLLQLSDSPRIVNVSSSMGQLESFPKGSWARGVLTDVDNLTEEKVDEILKKFLTDYQEGSLESKGWPRFLGAYKLSKAAMNGYTRILAKKYPSFCINCVCPGYVKTDITADTGILTVEEGAASPVRLALLPSGSPSGLFYYRSDVASF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00086 305 CDD carb_red_PTCR-like_SDR_c 7 302 IPR045313 GO:0016616
Lapu10g00086 305 PRINTS Glucose/ribitol dehydrogenase family signature 249 266 IPR002347 -
Lapu10g00086 305 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Lapu10g00086 305 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Lapu10g00086 305 PRINTS Glucose/ribitol dehydrogenase family signature 230 249 IPR002347 -
Lapu10g00086 305 Gene3D - 3 305 - -
Lapu10g00086 305 FunFam (+)-neomenthol dehydrogenase 2 305 - -
Lapu10g00086 305 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 291 IPR036291 -
Lapu10g00086 305 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 302 - -
Lapu10g00086 305 Pfam short chain dehydrogenase 8 179 IPR002347 -
Lapu10g00086 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 230 249 IPR002347 -
Lapu10g00086 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Lapu10g00086 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 174 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00086 Lapu-Chr10 2426825 2429627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00086 10 270 Acyl Lipid Metabolism Gene Families AT1G24360 25.095 7.54e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00086 K15095 - gmx:102663482 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00086 10 2426825 2429627 Lapu10g00086 10 2426825 2429627 ECH