Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00076 ATGGCTACCATTTCTGCTTCCCTCGCTCGCTTCTCCGTTATGTCGCAACCTTCCTCCAATTCACAGTATATCCTCTTCAACGTCGCTCCGCGAACCGGAAACCCCAATTCCCGAACCGGCTCGGCCCGGTTCAGGTGCTCGGCCGGCCAGACCGGGTTCTTCACAAAACTGGGGCGTTTGATTAAGGAGAAGGCGAAGAGCGACGTGGAGAAGGTGTTCTCGGGATTCTCCAAGACCCGCAACAACCTCGCCGTCATCGACGAACTTCTCCTCTACTGGAACCTCGCCGACACCGACCGAGTCCTTGACGAACTCGAAGAGGCTCTTTTAGTGTCTGATTTTGGCCCGAAAATCACTATTAAAATAGTGGAGAATTTGCGCGAGGATATATTTTCAGGGAAGCTTAAATCAGGGAATGAGATAAAGGAAGCATTGAAGAGGAATGTTCTGGAATTGTTAACCTCCAAGGGAAGTAAAACTGAACTTCAACTTGGATTCAGGAAACCAGCTGTAATAATGATAGTTGGAGTTAATGGTGGAGGGAAGACAACATCTTTGGGAAAGCTGGCCTATAGATTGAAGAATGAAGGGGCTAAGATATTGATGGCAGCCGGTGATACATTTAGAGCTGCTGCTAGTGATCAGTTGGAAATATGGGCTGAAAGGACTGGATGTGAGATTGTTATGGCTGAATCAGAGAAAGCAAAAGCATCATCAGTGCTTTCACAGGCTGTAAAAAAGGGAAAAGAGCTCGGTTTTGATATAGTATTATGTGATACATCTGGTCGTTTACACACTAATTACAGCCTAATGGAAGAGTTGATTTCCTGTAAAAAGTCTGTTGCTAAAGTCATTCCTGGTGCACCCAATGAGATCCTACTGGTTCTGGATGGGACCACTGGTCTGAATATGTTGCCACAAGCAAGAGAATTCAATGATGTTGTGGGTGTCACTGGTTTAATTTTGACCAAACTGGATGGTTCTGCTAGGGGTGGCTGTGTGGTCAGCGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCCTTTGATGCGGATGCCTTTGTCAATGCCATTTTTATGTAA 1116 0.4606 MATISASLARFSVMSQPSSNSQYILFNVAPRTGNPNSRTGSARFRCSAGQTGFFTKLGRLIKEKAKSDVEKVFSGFSKTRNNLAVIDELLLYWNLADTDRVLDELEEALLVSDFGPKITIKIVENLREDIFSGKLKSGNEIKEALKRNVLELLTSKGSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVMAESEKAKASSVLSQAVKKGKELGFDIVLCDTSGRLHTNYSLMEELISCKKSVAKVIPGAPNEILLVLDGTTGLNMLPQAREFNDVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDADAFVNAIFM* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00076 371 Gene3D - 59 160 IPR042101 -
Lapu10g00076 371 CDD FtsY 170 369 - -
Lapu10g00076 371 FunFam Cell division FtsY, chloroplastic-like protein 59 160 - -
Lapu10g00076 371 Pfam SRP54-type protein, GTPase domain 169 370 IPR000897 GO:0005525|GO:0006614
Lapu10g00076 371 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 41 370 - -
Lapu10g00076 371 SMART SRP54_N_2 72 153 IPR013822 GO:0005525|GO:0006614
Lapu10g00076 371 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 344 357 IPR000897 GO:0005525|GO:0006614
Lapu10g00076 371 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 69 146 IPR036225 -
Lapu10g00076 371 NCBIfam signal recognition particle-docking protein FtsY 98 370 IPR004390 GO:0006614
Lapu10g00076 371 SMART SRP54_3 169 371 IPR000897 GO:0005525|GO:0006614
Lapu10g00076 371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 369 IPR027417 -
Lapu10g00076 371 Gene3D - 161 371 IPR027417 -
Lapu10g00076 371 SMART AAA_5 168 341 IPR003593 GO:0016887
Lapu10g00076 371 FunFam Signal recognition particle receptor FtsY 162 371 - -
Lapu10g00076 371 Pfam SRP54-type protein, helical bundle domain 98 147 IPR013822 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00076 Lapu-Chr10 2329678 2337220 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00076 K03110 - gmx:100791073 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00076 10 2329678 2337220 Lapu10g00076 10 2329678 2337220 ECH