Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00068 ATGGACGGCGACGACGAGACCTCAGGTCCCATGATCGACGAAATCTACGCCAACGGCGGCGGCGACGACGGAGACAAGCGGAGCCGTCGCGCGATCATGAGCGGTGACCAGCTCGATGTCGAGGCGTACGCGGCGCTATACTCGGGGCGCACGAAGATCATGCGGCTCATCTTCATCGCCGACAAGATGAACAACGCGGCGACGCAGCTCGAGGCGCTGCGCATGGCCTACGACGAAATTAAGAAGGGGGAGAACACGCAGCTGTTCAGGGAGGTCGTGCAGAAGATCGATGGAAGGTTGGGACCGAGCTATTGCATGGACGCAGCGTGGTGTGATGCCGTGGATCGGAGAGCGGAGCAGAAGAAGGAGAAACTCGAGAATGAACTCAATGCGTATCGGACAAACTTGATTAAAGAAAGCATTAGAATGGGATACAATGACTTTGGAGACTTTTATTATGCTCATGGTCAATTGGGGGAAGCTTTTAAAAGTTATGTCCGCACTCGGGATTATTGCACCACATCAAAGCACATTATTCACATGTGTATGAGTGCAATTCTTGTCAGCATTGAGATGGGTCAATTTCCTCATGTTACAAGCTATGTTAGCAAGGCAGAACAGGCACCGGATGCCCTTGACTCAATAATAGTTGCAAAGCTACGCTGTGCTGCTGGATTGGCTAATCTAGAGGCCAAAAAGTACAAACTTGCTGCCCGAAAGTTTCTAGAAACAGGACCTGAACTGGCAAGTCACTATAATGATGTAATTGCACCTCAAGATGTTGCAACATATGGAGGACTTTGTGCACTTGCTACATTTGATCGGGCAGAGTTAAAGAGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGCTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAGCCACTACGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATTGCTTGATATACATTTGCATGACCATGTTGAGACACTTTATGATCAAATTCGTCACAAAGCCCTTATCCAGTACACACACCCATTTGTATCTGTTGATCTGAACATGATGGCTAATGCATTCAAGACAACTGTTGCTGGACTTGAGAAAGAGCTAGAAGCATTAATTACTGATAATCAGATACAGGCTCGAATTGATTCACACAACAAAATTTTGTATGCACGGCATGCGGATCAAAGGAATGCCACCTTTCAAAGGGTTCTGGAAACTGGAAGGGAATTTGATCGTGATGTTCGTGCCATGTTACTGAGATCAAATCTTATCAAGCATGAGTACAATATTAGAGCATTAAGGAAACTTTGA 1335 0.4599 MDGDDETSGPMIDEIYANGGGDDGDKRSRRAIMSGDQLDVEAYAALYSGRTKIMRLIFIADKMNNAATQLEALRMAYDEIKKGENTQLFREVVQKIDGRLGPSYCMDAAWCDAVDRRAEQKKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGQLGEAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFPHVTSYVSKAEQAPDALDSIIVAKLRCAAGLANLEAKKYKLAARKFLETGPELASHYNDVIAPQDVATYGGLCALATFDRAELKSKVIDNSNFRNFLELVPEVRELINDFYSSHYASCLEYLGNLKANLLLDIHLHDHVETLYDQIRHKALIQYTHPFVSVDLNMMANAFKTTVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLETGREFDRDVRAMLLRSNLIKHEYNIRALRKL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00068 444 ProSiteProfiles PCI domain profile. 230 403 IPR000717 -
Lapu10g00068 444 Pfam 26S proteasome subunit RPN7 107 281 IPR045135 -
Lapu10g00068 444 Coils Coil 111 142 - -
Lapu10g00068 444 Gene3D - 36 382 - -
Lapu10g00068 444 FunFam COP9 signalosome complex subunit 1 36 382 - -
Lapu10g00068 444 MobiDBLite consensus disorder prediction 1 27 - -
Lapu10g00068 444 Pfam PCI domain 297 398 IPR000717 -
Lapu10g00068 444 PANTHER 26S PROTESOME SUBUNIT 6 36 439 IPR019585 -
Lapu10g00068 444 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 415 IPR000717 -
Lapu10g00068 444 SUPERFAMILY "Winged helix" DNA-binding domain 327 407 IPR036390 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00068 K12175 - gmx:100782579 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00068 10 2153816 2158394 Lapu10g00068 10 2153816 2158394 ECH