Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1335 ATGTCCAAACAAACTTACAGTGTCTGCTTCTGTTGTCGCCGCCGTTTCAAACTCGCCTTGGCGGAGGCGCCGCCGGAGATTAAGACCCTTTTCTATAGTTACTCAGAGAATGATCTTATGTCACCTTTTCTGCTTCAAAGGTTCCTTGTTCATGTCCAGAAACAAGAGAAGGCTACCATAGAAGATGCTCAAGCCATTATCGATTCTCTCAAACATTTCCATCGCAAAGGTCTAAACCTTGAAAGTTTCTTCAAGTATCTCTTCAGTGATACTAACCTTCCTATTCTTCCTTCTCTTGGGGTGCACCATGATATGACTTTACCCTTGTCTCATTATTTCATATATACTGGCCATAATTCCTATCTAACTGGAAATCAGCTTAGCAGCGATTGCAGCGATGTCCCCATCATAAATGCGCTGAAGAGAGGTGTAAGGGTGATTGAATTGGACATATGGCCTAATGCATCAAAGGATAATGTGGATGTTCTTCATGGAAAGACATTGACTACTCCTGTGGAACTTATAAGGTGTTTGAGGGCTATCAAGGAACATGCATTTGATGCATCAGAATATCCAGTTGTAATAACCCTAGAAGACCACCTTACTCCAGATCTTCAGGCTAAAGTAGCTGAGATGGTTGCTCAAACATTTGGAGACATGCTATTTTCACCGAGTACAGAGATCCCGAAGGAATTCCCTTCCCCTGAATCACTTAAGAAGAGGATTATTATATCAACCAAACCACCAAAGGAGTACCTTGAGGGAAAAGAAATAAAGGAAAAAGGGGATGATTCACAGCATGGAAAGGCTTCCGCTGATGAAGAAGCTTGGGGAAAAGAATTCCCAAGCATGAAACATGGAACTATAGATTTCCAGGACAACAAAATGGATGAAGAAGATCTTAATGATGAGGAAGATAGTGATGAATCAGATAAGTCGCATCCTAATGAAGCACCAGAATATAGAAGCTTAATTGCAATTCATGCCGGAAAGCCTAAAGGTGGAATAACTGAATGGCTAAAAGTGGATCCTGATAAAGTTAGACGTCTGAGTATAAGTGAGCAGCAGCTTGAAAAGGCTGCTATTACTCTTGGCAAAGAAATTGTTAGGTTTACTCAGCGGAATATATTGAGGGTATATCCTAAAAGTACTCGCATTACGTCCTCAAATTATAATCCATTAATTGGGTGGATGCATGGAGCTCAAATGGTTGCATTTAACATGCAGGGGTATGGGAGACCACTTTGGTTGATGCATGGAATGTTCAAAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAGATTATCTAGTTAAGACTGGTCCAAATGATGAGGTCTTTGATCCTAAAGCTAAGTTACCTGTGAAGACTACCTTGAAGGTGACCGTATATATGGGCGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATACTCGCCGCCAGACTTCTACACAAGAGTGGGTATTGCTGGAGTACCAGATGATAATGTAATGAAAAAAACGAAGACGATAGAGGATAATTGGTTGCCTACTTGGAATGAGGTATTCGAGTTCCCACTTAAGGTTCCAGAATTGGCGCTACTTCGCATAGAAGTTCATGAGTATGACATATCTGAGAAAGATGATTTTGGTGGACAAACAGTCCTACCTGTGTGGGAGCTAAGAAGCGGAATTCGAGCTGTTCCACTGTATAGCCACAAGGGAGAAAAATACAACTCTGTAAAGCTTCTTATGCGCTTTGAATTTTATTGA 1761 0.41 MSKQTYSVCFCCRRRFKLALAEAPPEIKTLFYSYSENDLMSPFLLQRFLVHVQKQEKATIEDAQAIIDSLKHFHRKGLNLESFFKYLFSDTNLPILPSLGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDVPIINALKRGVRVIELDIWPNASKDNVDVLHGKTLTTPVELIRCLRAIKEHAFDASEYPVVITLEDHLTPDLQAKVAEMVAQTFGDMLFSPSTEIPKEFPSPESLKKRIIISTKPPKEYLEGKEIKEKGDDSQHGKASADEEAWGKEFPSMKHGTIDFQDNKMDEEDLNDEEDSDESDKSHPNEAPEYRSLIAIHAGKPKGGITEWLKVDPDKVRRLSISEQQLEKAAITLGKEIVRFTQRNILRVYPKSTRITSSNYNPLIGWMHGAQMVAFNMQGYGRPLWLMHGMFKANGGCGYVKKPDYLVKTGPNDEVFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYTRVGIAGVPDDNVMKKTKTIEDNWLPTWNEVFEFPLKVPELALLRIEVHEYDISEKDDFGGQTVLPVWELRSGIRAVPLYSHKGEKYNSVKLLMRFEFY* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1335 586 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 103 247 - -
Lan9g1335 586 Pfam C2 domain 459 560 IPR000008 -
Lan9g1335 586 PRINTS Phospholipase C signature 108 126 IPR001192 GO:0035556
Lan9g1335 586 PRINTS Phospholipase C signature 134 154 IPR001192 GO:0035556
Lan9g1335 586 PRINTS Phospholipase C signature 231 248 IPR001192 GO:0035556
Lan9g1335 586 PRINTS Phospholipase C signature 376 397 IPR001192 GO:0035556
Lan9g1335 586 PRINTS Phospholipase C signature 397 415 IPR001192 GO:0035556
Lan9g1335 586 PRINTS Phospholipase C signature 552 562 IPR001192 GO:0035556
Lan9g1335 586 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 350 435 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lan9g1335 586 SMART plcy_3 321 438 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lan9g1335 586 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 585 - -
Lan9g1335 586 Pfam Phosphatidylinositol-specific phospholipase C, X domain 105 247 IPR000909 -
Lan9g1335 586 SUPERFAMILY EF-hand 17 104 IPR011992 -
Lan9g1335 586 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 351 437 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lan9g1335 586 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 458 585 IPR035892 -
Lan9g1335 586 SMART plcx_3 103 247 IPR000909 -
Lan9g1335 586 MobiDBLite consensus disorder prediction 252 322 - -
Lan9g1335 586 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 585 IPR001192 GO:0035556
Lan9g1335 586 Gene3D - 21 97 - -
Lan9g1335 586 ProSiteProfiles C2 domain profile. 439 568 IPR000008 -
Lan9g1335 586 MobiDBLite consensus disorder prediction 252 281 - -
Lan9g1335 586 SUPERFAMILY PLC-like phosphodiesterases 103 439 IPR017946 GO:0006629|GO:0008081
Lan9g1335 586 CDD C2_PLC_like 456 586 - -
Lan9g1335 586 SMART C2_3c 458 566 IPR000008 -
Lan9g1335 586 Gene3D Phosphatidylinositol (PI) phosphodiesterase 99 451 IPR017946 GO:0006629|GO:0008081
Lan9g1335 586 Gene3D C2 domain 453 586 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1335 Lan-Chr9 20538945 20542829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1335 1 585 Acyl Lipid Metabolism Gene Families AT3G55940 68.562 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1335 K05857 - gmx:547864 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1140 2 22647311 22658382 Lan9g1335 9 20538945 20542829 LSH
Lan15g0115 15 819898 824565 Lan9g1335 9 20538945 20542829 PCT
Lan9g1335 9 20538945 20542829 Lan15g0115 15 819898 824565 PCT