LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan9g0994	ATGAACCAAGTGAAGCAAATCCATGCCTATACAGTGAGAAATGGCATAGATCAAACCAAAATTCTGATAGAAAAGTTACTTCAAATCCCAAACATCCAATATGCACATATCCTCTTTAACCACTCTCCTAACCCAACTGTTTATCTCTACAACAAGATCATTCAAGCCTATTCTTCTTCTTCCCATACCCAACACCAATGCTTCTCCCTTTACTCCCAAATGCGCCTTCATGGTTACCCTCCAAATCAACACACTTTCAATTTTCTCTTCTCTGCATGTACCTCCCTTTGCTCTCTTCCCCTTGCCCAATTCCTTCATACCCATTTTGTCAAATCAGGCTTTCAACCTGACCTCTTTGCTGCCACTGCTTTGCTTGACATGTATGCTAAACTGGGTACTTTGGAGTTTGCACGCAAAGTGTTTGATGAAATGGGTAAAAGAGAGATACCCTCGTGGAATGCTATGATTGCGGGGTACACAAGGGTTGGAGATATGGAGGAAGCATTGGAGTTGTTTAAGTTGATGCCTTGTAGGAATGTGGTGTCGTGGACTGCCGTGATATCTGGTTACTCGCGTAGCAAACAGTATGAGAAGGCTATGGGGTTGTTCCTGAGGATGGAAAGGTTGAAAGACATTAGGCCTAATGAAGTTACCGTGGCAAGCATTTTGCCAGCTTGTGCAAATCTTGGGGCACTGGAGATTGGGCAGAGGATTGAAGAGTACGCGAGAAAAAATGGGTTCTTTAAGAATTTGTATGTTGGCAATGCTGTGTTGGAGATGTATGCAAAATGCGGTAATATTGATGTTGCTTGGAGGGTGTTTGAGGAGATTGGCACGTTGGGAAACGTGTGCTCTTGGAACTCAATGATCATGGGTTTGGCTGTCCATGGACAATGCAGCAAGGCCCTTGAGCTTTATGATCAAATGATGAGAGAAGGAACTTCACCTGATGATGTGACATTTGTAGGGCTCCTCTTGGCATGCACACATGGAGGCATGGTTGTAAAAGGCAGGCGTATCTTCAAGTCAATGGCAACCGATTTCGACATTATTCCCAAACTAGAACACTACGGCTGCATGGTTGATCTCCTAGGACGTGCTGGGCAATTAAGAGAAGCTTATGAGGTCATCCAAAGTATGCCCATGAAACCAGACTCAGTAATATGGGGGGCTCTTTTGGGAGCTTGCAGCTTCCATGGTAATGTCGAGATAGCTGAGATAGCAGCCGAGTCACTATTTGTACTCGAACCTTGGAATCCAGGAAATTATGTCATTCTTTCTAACATTTACGCATCAGTTGGCAAATGGGATGGAGTTGCAAAGCTCAGGAAGGTGATGAAGGGCAGTCAAATTACGAAGACTGCCGGGCATAGTTTCATTGAAGAGGGGGGCCAATTGCATAAGTTCATTGTGGATGATAGATCACATCCAGAAAGCAATGAAATTTTTGCTTTGCTAGATGGAGTTTATGAACTGATAAAGCTTAATATAAGTTCATTTGAATGCCATTTGGATCTTGATTTGAGCTACTAA	1533	0.4344	MNQVKQIHAYTVRNGIDQTKILIEKLLQIPNIQYAHILFNHSPNPTVYLYNKIIQAYSSSSHTQHQCFSLYSQMRLHGYPPNQHTFNFLFSACTSLCSLPLAQFLHTHFVKSGFQPDLFAATALLDMYAKLGTLEFARKVFDEMGKREIPSWNAMIAGYTRVGDMEEALELFKLMPCRNVVSWTAVISGYSRSKQYEKAMGLFLRMERLKDIRPNEVTVASILPACANLGALEIGQRIEEYARKNGFFKNLYVGNAVLEMYAKCGNIDVAWRVFEEIGTLGNVCSWNSMIMGLAVHGQCSKALELYDQMMREGTSPDDVTFVGLLLACTHGGMVVKGRRIFKSMATDFDIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMPMKPDSVIWGALLGACSFHGNVEIAEIAAESLFVLEPWNPGNYVILSNIYASVGKWDGVAKLRKVMKGSQITKTAGHSFIEEGGQLHKFIVDDRSHPESNEIFALLDGVYELIKLNISSFECHLDLDLSY*	511

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan9g0994	510	Pfam	PPR repeat	356	381	IPR002885	-
	Lan9g0994	510	Pfam	PPR repeat	255	278	IPR002885	-
	Lan9g0994	510	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	117	147	IPR002885	-
	Lan9g0994	510	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	148	182	IPR002885	-
	Lan9g0994	510	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	282	316	IPR002885	-
	Lan9g0994	510	PANTHER	OS06G0125600 PROTEIN	2	461	-	-
	Lan9g0994	510	Pfam	E motif	399	461	IPR046848	-
	Lan9g0994	510	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	46	81	IPR002885	-
	Lan9g0994	510	Pfam	PPR repeat family	282	328	IPR002885	-
	Lan9g0994	510	Pfam	PPR repeat family	45	93	IPR002885	-
	Lan9g0994	510	Pfam	PPR repeat family	178	227	IPR002885	-
	Lan9g0994	510	Pfam	Pentatricopeptide repeat domain	110	149	IPR002885	-
	Lan9g0994	510	Gene3D	Tetratricopeptide repeat domain	17	149	IPR011990	GO:0005515
	Lan9g0994	510	Gene3D	Tetratricopeptide repeat domain	282	481	IPR011990	GO:0005515
	Lan9g0994	510	Gene3D	Tetratricopeptide repeat domain	150	246	IPR011990	GO:0005515
	Lan9g0994	510	TIGRFAM	PPR: pentatricopeptide repeat domain	285	317	IPR002885	-
	Lan9g0994	510	TIGRFAM	PPR: pentatricopeptide repeat domain	181	216	IPR002885	-
	Lan9g0994	510	TIGRFAM	PPR: pentatricopeptide repeat domain	151	180	IPR002885	-
	Lan9g0994	510	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	2	461	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan9g0994	Lan-Chr9	16799316	16801145	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan9g0994	65	494	Glycoside Hydrolase	AT3G49170	35.516	1.30e-90	293

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan9g0994	-		-	gmx:100790321	859.751