Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0976 ATGGCTAAGCTATCTCCTTTTCTTCATCTTACTCCTCATTCTCTTCACAACCCACAAACCCACATGCCTCTAAGAACCCATTCACCCCCTTCAATTCTTTATGTAATATCAGATACAAAGCATCTTCATTCAACTTCATTTTCATCATCAAAATTATCTCTTTCTATTTTGGATAGCTTGGGTGAGTTAAGGACTTTGAATTCTGTTAGGGAATTGCATGCCCAGATGTTGAAATTGCCAAAAAATGGGAACTTGGCTACAATGGATGCAAGCTTGATTAGATATTATTTGGAATTTGGAGATTTTGTGTCAGCAATAGAGGTATTTTTTGTTGGTTTCACAAGGAATTATCTTATTTGGAATTCTTTTCTTGAGGAATTTGCTAGTTTTAGAGGTAACCCAAATGAGATCTTGAAGGTGTTTAAAGAATTGAGTAGAAAAGGAGTGAACTTTGATAGCAAAGCTTTAACTGTTGTGCTGAAAATTTGCTTGGCTTTAATGGATTTGTGGGTTGGTTTGGAAATTCATGCTTGTTTGATCAAAAGAGGGTTCCATTTTGATGTGCATTTGAGTTGTGCATTGATCAATTTGTATGAGAAGTGTTGGGGTATAGATAAGGCCAATCAAGTATTTCATGAAACCCCATATCAAGAAGATTTTTTGTGGAATACAGTACTTATAGCAAACCTGAGGAGTGAGAGGTGGTGGAATGCCTTGGAACTGTTTCGGGGCATGCAGTTATCATCTGCCAAAGCCACTGGTGGCACCATTGTGAAGATGATGCAAGCATGTGGAAAGTTAAGAGCTCTCAATGAAGGGAAGCAGATTCATGGGTATGTTTTGAGATTTGGACTTGTGTCAAATATTTCAATTTCCAATTCCATAATTAGCATGTACTCTAGAAACAGTAGACTCAGGCTAGCCAGAGCAGTTTTTGATTCAATGGAGGATCATAACTTGTCATCTTGGAACTCGATAATTTCAAGTTATGCCGTTGATGGCTGTTTGAATGAGGCCTGGGATATGTTCCAAGAAATGGAGTCTTCCAGCATTAAACCAGACATTATAACTTGGAATTCTCTTCTGTCAGGCCATTTTCTTCAGGGCTCATATGAAATGGTTCTGAGCAATTTCCGGAACCTGCAAAGTGCAGGATTCAAGCCAGATTCGTGCTCGGTAACCAGTGCTTTACAAGCAGTTATTGAATTGGATTTGTTTAACTATGGGAAAGAAATCCATGGTTATATAATCAGAAATAAGCTTGACTATGATGTCTATGTTTGTACTTCATTGGTTGATATGTATATCAAGAATGATCGGTTAGATAAAGCTCAAGCAGTGTTCCACCATACAAAGAACAAAAACGTTTGTGCTTGGAATTCTTTGATATCAGGGTACTGCTTCAAGGGCCTGTTTAGCAATGCTGAAACACTACTGAACCAGATGGAGAAGGAAGGAATAAAACATGATTTGGTGACGTGGAACAGTTTGGTTTCAGGTTATTCAATGTGGGGCCGCAGCGAAGAAGCTCTGGCTGTGATTAATCGGATGAAGAGCTTGGGATTTACTCCTAATGTGGTGTCCTGGACAGCTATGATATCAGGCTGTTCTCAGAATGAGAAATATCGGGATGCACTACAGTTTTTCATCCAAATGCAGGAGGAAAATGTAAAACCTAACTCTACTACCATTTGCAGCTTACTTCGTGCGTGTTCAGGTCCATCGCTGTTAAAGAAAGGAGAAGAGATACACTGCTTCAGTATAAGACTTGGATTTGTGGATGACATATATTTAGCCACGGCCCTCATTGACATGTATAGTAAGGGAGGAAAATTAAAAGTAGCCCATGAAGTTTTCAATGGAATTCGGGAAAAAACACTGCCATGTTGGAATTGCATTTTGATGGGATATGCCCTTCATGGCCATGGAGAAGAGGTAATGATTCTTTTTGACAACATGTGCAAAACAGGCATCAGACCAGATGCAATAACCTTCACAGCTCTTCTATCTGGCTGCAAAAGTTCAGGTTTAGTTGATGAAGGGTGGAAGTACTTCGACAGTATGAAGACAGATTACAACATTATTCCAACAATTGAACACTACTCTTGCATGGTAGACCTTCTTGGAAAAGCCGGTTTTCTTGACGAAGCTGTAGATTTCATACAAAATATGCCAGTAAAGCCGGATGCCAGTATTTGGGGTGCTCTTCTTGCATGCTGTAGAATTCACAAAGATATTAAGCTAGCAGAGATTGCAGCAAGGAAACTTTTCAAGTTGGAACCGTATAATTCCGCTAACTATGTGTTGATGATGAATATATATTCCAGTTTAAACCGGTGGGACGATGTGGAGCGCCTTAAAGATAAAATGACTGCCTTGGGGATCAAAAGTCCTCATGTATGGAGCTGGACACAAGTTAATCAGTCTGTTCATGTGTTTTCCACAGAAGGGAAATCACATCCCGAGGAAGGAGAAATATATTTTGAGTTGTATCAGTTAATTTCTGAAATACGAATGCTGGGATACATACCTGACATTAATTGTGTTTATCAGAACATTGACGACAAAGAGAAGGAGAAGGTTCTACTCAGTCATACCGAGAAGTTGGCTATGGCTTATGGACTGATGAAAACACAAAGTGGGTCACCTATTAGGGTAGTTAAGAACACAAGAATTTGTCATGACTGTCATACAGCAGCAAAGTACATTTCTTTGGCTCGAAATCGTGAGATTTTCCTTAGAGATGGTGGTCGTTTTCACCATTTTATGAATGGGCAGTGCTCCTGCAATGATTGTTGGTAA 2802 0.3933 MAKLSPFLHLTPHSLHNPQTHMPLRTHSPPSILYVISDTKHLHSTSFSSSKLSLSILDSLGELRTLNSVRELHAQMLKLPKNGNLATMDASLIRYYLEFGDFVSAIEVFFVGFTRNYLIWNSFLEEFASFRGNPNEILKVFKELSRKGVNFDSKALTVVLKICLALMDLWVGLEIHACLIKRGFHFDVHLSCALINLYEKCWGIDKANQVFHETPYQEDFLWNTVLIANLRSERWWNALELFRGMQLSSAKATGGTIVKMMQACGKLRALNEGKQIHGYVLRFGLVSNISISNSIISMYSRNSRLRLARAVFDSMEDHNLSSWNSIISSYAVDGCLNEAWDMFQEMESSSIKPDIITWNSLLSGHFLQGSYEMVLSNFRNLQSAGFKPDSCSVTSALQAVIELDLFNYGKEIHGYIIRNKLDYDVYVCTSLVDMYIKNDRLDKAQAVFHHTKNKNVCAWNSLISGYCFKGLFSNAETLLNQMEKEGIKHDLVTWNSLVSGYSMWGRSEEALAVINRMKSLGFTPNVVSWTAMISGCSQNEKYRDALQFFIQMQEENVKPNSTTICSLLRACSGPSLLKKGEEIHCFSIRLGFVDDIYLATALIDMYSKGGKLKVAHEVFNGIREKTLPCWNCILMGYALHGHGEEVMILFDNMCKTGIRPDAITFTALLSGCKSSGLVDEGWKYFDSMKTDYNIIPTIEHYSCMVDLLGKAGFLDEAVDFIQNMPVKPDASIWGALLACCRIHKDIKLAEIAARKLFKLEPYNSANYVLMMNIYSSLNRWDDVERLKDKMTALGIKSPHVWSWTQVNQSVHVFSTEGKSHPEEGEIYFELYQLISEIRMLGYIPDINCVYQNIDDKEKEKVLLSHTEKLAMAYGLMKTQSGSPIRVVKNTRICHDCHTAAKYISLARNREIFLRDGGRFHHFMNGQCSCNDCW* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0976 933 Pfam PPR repeat family 454 493 IPR002885 -
Lan9g0976 933 Pfam PPR repeat family 629 672 IPR002885 -
Lan9g0976 933 Pfam PPR repeat family 524 571 IPR002885 -
Lan9g0976 933 Pfam PPR repeat family 319 357 IPR002885 -
Lan9g0976 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 626 660 IPR002885 -
Lan9g0976 933 Pfam DYW family of nucleic acid deaminases 841 933 IPR032867 GO:0008270
Lan9g0976 933 Gene3D Tetratricopeptide repeat domain 112 268 IPR011990 GO:0005515
Lan9g0976 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Lan9g0976 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Lan9g0976 933 Gene3D Tetratricopeptide repeat domain 677 854 IPR011990 GO:0005515
Lan9g0976 933 Gene3D Tetratricopeptide repeat domain 288 407 IPR011990 GO:0005515
Lan9g0976 933 Gene3D Tetratricopeptide repeat domain 585 676 IPR011990 GO:0005515
Lan9g0976 933 Gene3D Tetratricopeptide repeat domain 408 503 IPR011990 GO:0005515
Lan9g0976 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 763 797 IPR002885 -
Lan9g0976 933 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 216 921 - -
Lan9g0976 933 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 132 213 - -
Lan9g0976 933 TIGRFAM PPR: pentatricopeptide repeat domain 458 490 IPR002885 -
Lan9g0976 933 TIGRFAM PPR: pentatricopeptide repeat domain 492 526 IPR002885 -
Lan9g0976 933 TIGRFAM PPR: pentatricopeptide repeat domain 293 320 IPR002885 -
Lan9g0976 933 TIGRFAM PPR: pentatricopeptide repeat domain 527 560 IPR002885 -
Lan9g0976 933 TIGRFAM PPR: pentatricopeptide repeat domain 629 662 IPR002885 -
Lan9g0976 933 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Lan9g0976 933 TIGRFAM PPR: pentatricopeptide repeat domain 356 390 IPR002885 -
Lan9g0976 933 TIGRFAM PPR: pentatricopeptide repeat domain 663 697 IPR002885 -
Lan9g0976 933 Pfam PPR repeat 221 246 IPR002885 -
Lan9g0976 933 Pfam PPR repeat 700 725 IPR002885 -
Lan9g0976 933 Pfam PPR repeat 600 625 IPR002885 -
Lan9g0976 933 Gene3D Tetratricopeptide repeat domain 515 584 IPR011990 GO:0005515
Lan9g0976 933 Pfam E motif 743 797 IPR046848 -
Lan9g0976 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Lan9g0976 933 PANTHER OS05G0586900 PROTEIN 216 921 - -
Lan9g0976 933 PANTHER OS05G0586900 PROTEIN 132 213 - -
Lan9g0976 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Lan9g0976 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Lan9g0976 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 661 691 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0976 Lan-Chr9 16487427 16490570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0976 144 933 Glycoside Hydrolase AT3G49170 30.833 1.39e-130 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0976 - - gmx:100796795 1521.91