LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan9g0638	ATGGATCATTCTCTTTCTCTTAGATCAAGCTTGACTTTTGGAGAAACTGTTTGTGCTGTGTTCATACCTCTGATTGGAATATTTGAAAGTTTGTTTTTTGGGTTAGCTAGTTGCTTTCATTTGAATCCTTCTAGTTCAATTAACAACAATAACAAGAAGAAGAAGATTCTTACTACTTTCAATGATATTCAACGCCTTGCACATCATTCTCCATTTAGTGTTAATGAAATTGAGGCATTGCATGAGTTGTTCAAGAAGTTGAGTAGTTCTATCATTGATGATGGTCTCATCCACAAGGAAGAGCTCACATTGGCATTATTGAAGACCCCCGCTGGCGAGAATCTTTTCCTTGACAGGGTGTTTGATCTCTTCGATGAAAAAAGAAATGGCGTTATAGAGTTTGAGGAGTTTGTGCATGCTCTCAGTATCTTTCATCCTTATGCTCCGATAGAAGAGAAAACTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACCGGATATATTGAGCGAGAAGAAGTTAATCAAATGGTGGTTGCTATTTTGTCAGAATCCGGCATGAAGCTGGAAGATGAAGTTCTTGAAGCCATTATCGATAAAACATTTCAAGATGCTGATGTTGACAACGATGGCAAGATAAGTAAGGAAGAATGGAAGGCATTCGTTGTTCGGCACCCGACACTCTTGAAGCACATGACTCTTCCTCATCTGAAGGACATTACCACAGTATTTACCAGCTTCATATTCAACACAGAAGTTGATGATTCTCACTGGCAACAAAAGGAAAATCATAAATATAAATAA	804	0.3769	MDHSLSLRSSLTFGETVCAVFIPLIGIFESLFFGLASCFHLNPSSSINNNNKKKKILTTFNDIQRLAHHSPFSVNEIEALHELFKKLSSSIIDDGLIHKEELTLALLKTPAGENLFLDRVFDLFDEKRNGVIEFEEFVHALSIFHPYAPIEEKTDFAFRLYDLRQTGYIEREEVNQMVVAILSESGMKLEDEVLEAIIDKTFQDADVDNDGKISKEEWKAFVVRHPTLLKHMTLPHLKDITTVFTSFIFNTEVDDSHWQQKENHKYK*	268

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan9g0638	267	Gene3D	-	62	256	-	-
	Lan9g0638	267	ProSiteProfiles	EF-hand calcium-binding domain profile.	149	184	IPR002048	GO:0005509
	Lan9g0638	267	ProSitePatterns	EF-hand calcium-binding domain.	206	218	IPR018247	-
	Lan9g0638	267	Pfam	EF-hand domain pair	152	221	IPR002048	GO:0005509
	Lan9g0638	267	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	5	255	-	-
	Lan9g0638	267	SUPERFAMILY	EF-hand	63	247	IPR011992	-
	Lan9g0638	267	ProSiteProfiles	EF-hand calcium-binding domain profile.	193	228	IPR002048	GO:0005509
	Lan9g0638	267	CDD	EFh	153	222	IPR002048	GO:0005509
	Lan9g0638	267	Pfam	EF-hand domain pair	94	138	IPR002048	GO:0005509
	Lan9g0638	267	PANTHER	CALCINEURIN B	5	255	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Lan9g0638	267	SMART	efh_1	116	144	IPR002048	GO:0005509
	Lan9g0638	267	SMART	efh_1	153	181	IPR002048	GO:0005509
	Lan9g0638	267	SMART	efh_1	197	225	IPR002048	GO:0005509
	Lan9g0638	267	ProSiteProfiles	EF-hand calcium-binding domain profile.	112	147	IPR002048	GO:0005509
	Lan9g0638	267	PRINTS	Recoverin family signature	120	141	-	-
	Lan9g0638	267	PRINTS	Recoverin family signature	167	185	-	-
	Lan9g0638	267	PRINTS	Recoverin family signature	213	233	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan9g0638	Lan-Chr9	9407984	9413561	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan9g0638	61	256	EF-hand Containing Proteins	AT4G26570	63.000	9.32e-89	261

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan9g0638	K06268		-	gmx:100801943	405.601