Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0536 ATGGAAGAAACAGAAGCAGAAGTGGCACCCGCACTCATCGCCGTTCATCCTCACCGTTCCTCTGTCGCCGTCGCCGTTGGATGCGACCTCCGCGTCTTCGACCTTCTCGCTGGTGTTGGAGTTACTTTACTCGATGATTCTTCTTCTTCTTCATCTTCATCTTCTTCATCATTTCATAAGGATTCAATCAGAGCCATTCGTTTCAGTGCAAATGGAAAACTCTTTGTTTCTGCCGGTGATGATAAGACTCTCAAGATTTGGTCTTCTATCTCTTGGCGCTGCATCTTTACTCTTTCCTCTGAAAAGAGAATCAGTGCAGTTGCCATAAGCAACAATGAATCTTATGTGTGTTTTGCTGACAAATTTGGGGTTGTTTGGGTTGTGGATATCACTGGCTTTGATGCCAATCAACCATTACTTGATAAGAAACCAACACCCCTTCTTTCTCACTACTGCAGTATCATCACTAGCTTGGAATTTTCCCCAGATGATCGGTTTATTTTGAGTGCCGATCGAGATTTCAAAATTCGCGTTACTAATTTTCCTAACAAGCCATTAAATGGAGCTCATGAAATACAAAGTTTCTGTCTTGGTCATACAGAGTTTGTCTCTTGCCTTGCTTTCTTTCAAGCTCAGGAATACCAGCAGCACCTTCTTTCTGGCAGTGGTGATTCAACTGTCCGGTTGTGGGATGTCTCATCTGGAGCTCTCCTAGATACTTGTGAGGTTGCTAATAAGGCAGGACTTTTAGAGTCTAATGGTAATGGTAAATCAGAGGAGCATGGCCATGCTGTTACTGATTTATGCACCACCCTGGATGGTTTGCTTGTTGCAGTGGCTATTCAAAGCTTGCAAGGAGTAGCATTGTTGAGCCACAATGTTTCTGCACAGACACTTACCCTTGCTAAGGTGGTTTCTATTGAAGGAGAGGCCTTTGTCCCTACCTCCTTGGGGTATGCCCCCTCTGCTAGGGAATTGTGGATAGTTACAGGTGTCTCTAGTTTACCTGGTTGTAGTCACCCTTCTTTTGCTCGGGTCCGAGTAATTTCCGGTATTGATATTGAGCAAGAGGCAGTTGTTCTCGAAGATGAGAAGATGCCTGGGGGAGAAAAGCTGCTAGAAACATTGCAGGGAACTGCGTCTGTCGATGAGAATGTTTTTTTGGCAGCGGCTGAAGCTGTCAAAGCAGCAATGCACAATCTATTAATAAAAAAGCAATACCCTTCAGAGAGTAGAGAATCTAGGAAGAAAACCAGGAATGATAGAAAACTCAAGCAGTAA 1281 0.4411 MEETEAEVAPALIAVHPHRSSVAVAVGCDLRVFDLLAGVGVTLLDDSSSSSSSSSSSFHKDSIRAIRFSANGKLFVSAGDDKTLKIWSSISWRCIFTLSSEKRISAVAISNNESYVCFADKFGVVWVVDITGFDANQPLLDKKPTPLLSHYCSIITSLEFSPDDRFILSADRDFKIRVTNFPNKPLNGAHEIQSFCLGHTEFVSCLAFFQAQEYQQHLLSGSGDSTVRLWDVSSGALLDTCEVANKAGLLESNGNGKSEEHGHAVTDLCTTLDGLLVAVAIQSLQGVALLSHNVSAQTLTLAKVVSIEGEAFVPTSLGYAPSARELWIVTGVSSLPGCSHPSFARVRVISGIDIEQEAVVLEDEKMPGGEKLLETLQGTASVDENVFLAAAEAVKAAMHNLLIKKQYPSESRESRKKTRNDRKLKQ* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0536 426 PANTHER WD40 REPEAT PROTEIN 4 11 423 IPR028884 GO:0036265
Lan9g0536 426 MobiDBLite consensus disorder prediction 407 426 - -
Lan9g0536 426 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 240 IPR001680 GO:0005515
Lan9g0536 426 Gene3D - 11 101 IPR015943 GO:0005515
Lan9g0536 426 Pfam WD domain, G-beta repeat 58 88 IPR001680 GO:0005515
Lan9g0536 426 Pfam WD domain, G-beta repeat 196 231 IPR001680 GO:0005515
Lan9g0536 426 Pfam WD domain, G-beta repeat 149 178 IPR001680 GO:0005515
Lan9g0536 426 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 235 - -
Lan9g0536 426 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 88 - -
Lan9g0536 426 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 88 IPR001680 GO:0005515
Lan9g0536 426 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 19 418 IPR028884 GO:0036265
Lan9g0536 426 ProSitePatterns Trp-Asp (WD) repeats signature. 218 232 IPR019775 -
Lan9g0536 426 SUPERFAMILY WD40 repeat-like 13 279 IPR036322 GO:0005515
Lan9g0536 426 SMART WD40_4 188 231 IPR001680 GO:0005515
Lan9g0536 426 SMART WD40_4 49 88 IPR001680 GO:0005515
Lan9g0536 426 SMART WD40_4 91 129 IPR001680 GO:0005515
Lan9g0536 426 SMART WD40_4 141 180 IPR001680 GO:0005515
Lan9g0536 426 Gene3D - 102 335 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0536 K15443 - gmx:100786310 603.979