Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0482 ATGAGAAAGTGTCTTTGTTCTCCAATTGAATTGGTTGCTTCCTCACAATCCTCTGCCTTCAATAACCAGGAAGCTAGAGCCTTGTTAGGAAGAGATGAATATCAGAAAGGAAATATTGAAGTTGCTTTACATGTTCTTGAGGGAATAGATATAGATGATCTGACTCTGAAGATAAAAACTTCCCTTGCCAAAAGCAGAGATCGGCGGAAGAGACATTCCCGGAATTATGCTGCATCGCCAATGTCCATACATGTTGTTGGCTTACTGTTCGAAGCATTTTTTGTAAAAGCAAAATGTTTACAGGTTCTTGGAAGGTTTAAAGAAGCTGCCCAATCTTGTAAAGTTATTCTGGACATAGTTGAGTCTTCATTACCTGAAGGATTGCCTGAAAACTTCGGTGCTGACTGTAATTTGCAGGCAACTTTGAGCAACGCAGTTGAGCTACTTCCAGAACTATGGAAACTTGCCGACTGTCCACGAGAAGTTGTTTTGTCTTACCGGCGGGCAATCCTTCATAAATGGAGTCTTGGTGTAGAGACCAGAACAAAGATTCAGAAAGAATTTGTTGTTTTTCTACTATATAGTGGAGCGGAATCAGTACCCCCGAATCTACGTTACCAAAGGGAGAACTCATTTGCACCTATAAACAACATGGAAGAGGCTATACTTATTTTAATGATTTTGCTTCGACAAGTTTCTCTAAAGAAAATTGAGTGGGATCCTTCAATTATGGATCATCTTTCATTTGCTCTATCGGTTTCGGGGGATTTGACAGCTTTAGCCGATCAATGGAAAGAATTGCTCCCTGGGACTGTTAACCGGAGAGAGAGGTGCCATGTCCTTGCTCTTTGTTACCATGGAGCGGGTAAGGATTTGGTAGCACTGGATCTTCTTAGGAAATTGTTAAGTAGCACAGAAGACCCAAAACATGTTCCAGCTTTGTTGATGGCTTCTAAGATTTGTTGCGAGAATCCTAATCTCGCCAAAGATGGAATAAGCTTTGCTCGCAGATTGCTTGAGAACTTGAATGGAAAATGTGATCAATTGGAAACACTTGCCCATTGCTTCCTTGGTGTTTCACTTTCAGCTCACTCAAAATTGGCTATTCCTAATTCTGAGAGGTTCGAGAAACAATCTGAGGCACTTCATTCCCTGGTAACTGCGAGCAGAATGACCAGAATGAGAGACCCCCGTGTACTATACTATCTCAGTTTAGAATATGCCGAACATAGGAAGTTCGATGCTGCTCTTCACTATGCAGAATGCTTCCTAGAACTGGAAGCTGAGTCTAATGTTAAAGGGTGGTTATTGCTAGCCCGGATATTATCAGCTCAAAAGCAGTTTTTGGATGCCGAGTCTATTGTCGATGCTGCTTTGGATCAGACTGGGATATGGGATCAAGGTGATTTGTTGCGAACAAAAGCTAAAATGAAAATTGCACAGGGCCAGTTAAGGAGTGCCCAAAAGATATATAGTCGGCTTTTCGGTATTCTTAAAGTTCAGAGACAAACTATTGGCTCAAGGAAGGATCTATATAAGGACTACCGAGATCGCACCAGGAAGTTGGAAGTGGAAGTATTGCATGATCTTGCTTATCTATACATAAGTGTGTCATGTTGGCACGATGCAGAGGCGTGTCTTTCAAAATCGAAGGCCATCAAGCTATACTCTGCTTCTAGATGTCATGCAATAGGTACAATGTACGAAGCAAAGGGCCTTGACAAAGACGCTCTACAAGCTTTTCGCAATGCTTTGGACATTGAGCCAGGACATGTCCCTAGCTTGATCTCAACCGCTGTTGTTCTTAGACGCGGCAACGAATCCGATCCTGCTATCAGAAGCTTTCTGATGGATGCACTACGACATGACAGATTAAACGCTTCTGCTTGGTATAATCTTGGCATTTTCCACAAGACTAATGGTACAATATTAGACGCCACAGAATGTTTTCAGGCAGCTAACATACTCCAAGAATCGGCACCAGTTGAACCTTTCAGATGA 2001 0.4218 MRKCLCSPIELVASSQSSAFNNQEARALLGRDEYQKGNIEVALHVLEGIDIDDLTLKIKTSLAKSRDRRKRHSRNYAASPMSIHVVGLLFEAFFVKAKCLQVLGRFKEAAQSCKVILDIVESSLPEGLPENFGADCNLQATLSNAVELLPELWKLADCPREVVLSYRRAILHKWSLGVETRTKIQKEFVVFLLYSGAESVPPNLRYQRENSFAPINNMEEAILILMILLRQVSLKKIEWDPSIMDHLSFALSVSGDLTALADQWKELLPGTVNRRERCHVLALCYHGAGKDLVALDLLRKLLSSTEDPKHVPALLMASKICCENPNLAKDGISFARRLLENLNGKCDQLETLAHCFLGVSLSAHSKLAIPNSERFEKQSEALHSLVTASRMTRMRDPRVLYYLSLEYAEHRKFDAALHYAECFLELEAESNVKGWLLLARILSAQKQFLDAESIVDAALDQTGIWDQGDLLRTKAKMKIAQGQLRSAQKIYSRLFGILKVQRQTIGSRKDLYKDYRDRTRKLEVEVLHDLAYLYISVSCWHDAEACLSKSKAIKLYSASRCHAIGTMYEAKGLDKDALQAFRNALDIEPGHVPSLISTAVVLRRGNESDPAIRSFLMDALRHDRLNASAWYNLGIFHKTNGTILDATECFQAANILQESAPVEPFR* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0482 666 ProSiteProfiles TPR repeat profile. 558 591 IPR019734 GO:0005515
Lan9g0482 666 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 20 666 - -
Lan9g0482 666 Pfam Tetratricopeptide repeat 405 461 - -
Lan9g0482 666 PANTHER PROTEIN NPG1 20 666 IPR043376 -
Lan9g0482 666 SMART tpr_5 558 591 IPR019734 GO:0005515
Lan9g0482 666 SMART tpr_5 397 430 IPR019734 GO:0005515
Lan9g0482 666 SMART tpr_5 90 123 IPR019734 GO:0005515
Lan9g0482 666 SMART tpr_5 432 465 IPR019734 GO:0005515
Lan9g0482 666 SMART tpr_5 627 660 IPR019734 GO:0005515
Lan9g0482 666 Coils Coil 332 352 - -
Lan9g0482 666 Gene3D Tetratricopeptide repeat domain 10 504 IPR011990 GO:0005515
Lan9g0482 666 Gene3D Tetratricopeptide repeat domain 509 661 IPR011990 GO:0005515
Lan9g0482 666 SUPERFAMILY TPR-like 380 653 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0482 Lan-Chr9 7183362 7188852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0482 16 666 Calmodulin-binding Proteins AT4G28600 54.955 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0482 K21843 - gmx:100809498 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1356 11 20726801 20732903 Lan9g0482 9 7183362 7188852 PCT