Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0444 ATGGATCATCACAACCCTACGTCCGAACCCACCACCCCTACCACCCCAAGACCTTCCCTTGTCCTCTCTACCTCCGCCAAGTCCCTCCTTGTTTCCAACTCCAACAAATCCTTCTTCCTATCTAACTCTGGAAAGCGGTTAGATAGCAAGAAGAAATATGTCAAACAGGTTACTGGTCGACATAATGATACCGAGCTCCACCTCGCCGCTCAACGCGGCGACGTGGGCTCGGTCAAACAAATCCTCGCTGAGATTGATGACCAAATGATGGGCACGCTCAGCGGGGCCGAGTTTGACGCCGAGGTCGCAGACATTAGGTCTGCGATCGTTAATGAGGTTAATGAGTTGGGTGAGACCGCTTTGTTTACCGCTGCTGAGAAGGGTCACCTTGATGTTGTTAAGGAACTTTTGACTTATAGCACTATAAAAGCACTTTCCTTTAAAAACCGGTCTGGTTTTGATCCCTTTCATATTGCGGCTAATAAGGGTCACCAAGCCATTGTGCAGGTTCTACTAGACCATGATTCACAACTAATCAAGACATTTGCACAATCAAATGCAACGCCTCTTATATCAGCAGCCACAAGAGGTCATGCAAATGTAGTTGAACTATTGCTATCACAAGATCCTAGTCAATTGGAAATATCAAGGTCCAATGGAAAAAATGCACTACATTTAGCTGCAAGACAAGGACATGTTGATGTTGTGAAGTTATTGCTACGGAAAGATCCACAACTTGCTCGGCGAACCGATAAGAAAGGACAAACTGCACTTCATATGGCTGTGAAGGGAACAAGCTGTGATGTGGTGAGGCAGCTTCTTAATGCAGATTCTGCAATTGTTATGCTGCCAGATAAGTTTGGAAATACTGCATTGCATGTTGCTACCAGAAAGAAAAGGGCAGAGATAGTGAATGAGCTGGTACTTCTTCCTGACACCAATGTGAATGCCTTAACAAGAGATCACAAAACAGCTCTTGACCTTGCTGAAGGACTACCAATCACTGAAGAAATTTTGGAGATCAAAGAGTGCCTTATTCGGCACGGCGGAGTAAAAGCCAATGATCTCAACCAACCAAGAGATGAGCTAAGGAAAACAATGACACAAATAAAGAAAGATGTCTATTACCAACTCGAACAAACCCGAAAAACGAACAAAAATGTGACAGGAATAGCCAAGGAGTTAAAGAAATTACACAGGGCAGGAATCAACAATGCTACGAATTCGGTAACTGTGGTTGCTGTGCTATTCGCAACGGTTGCATTTGCAGCACTTTTCACAGTCCCTGGAGGTGATGATAATGATGGAAAAGCCGTGATGGTTCACACTGTTTCATTCAAAATGTTCTTTCTGTCGAATGCCACTGCGCTCTTTGTTTCATTGGCCGTTGTCGTGGTTCAAATCACGGTTGTTAGAGGGGAAACAAAATCCGAGAGAAGGGTTGTTGAGGTTATTAATAAGATGATGTGGTTAGCTTCAGTTTGTACCTCAATTTCATTCATTGCAGCATCTTATATAATCGTCGGTCGCCGAAGTCTTTGGGCTGCAATTCTTGTTACTGTTGTAGGGAGTGTTATAATGGCTGGTATTCTTGGTACTATGACATATTATGTGGTTAAATCGAAACGGTATCGAAGAGTGAGGAAGAAAGAGAAGCTATCAAGGCATGGATCACAGTACTCGTGGCGAAATTCGGATTCCGAATCGACAGAAGTAAATCCAATTTATGCTATTTGA 1737 0.4358 MDHHNPTSEPTTPTTPRPSLVLSTSAKSLLVSNSNKSFFLSNSGKRLDSKKKYVKQVTGRHNDTELHLAAQRGDVGSVKQILAEIDDQMMGTLSGAEFDAEVADIRSAIVNEVNELGETALFTAAEKGHLDVVKELLTYSTIKALSFKNRSGFDPFHIAANKGHQAIVQVLLDHDSQLIKTFAQSNATPLISAATRGHANVVELLLSQDPSQLEISRSNGKNALHLAARQGHVDVVKLLLRKDPQLARRTDKKGQTALHMAVKGTSCDVVRQLLNADSAIVMLPDKFGNTALHVATRKKRAEIVNELVLLPDTNVNALTRDHKTALDLAEGLPITEEILEIKECLIRHGGVKANDLNQPRDELRKTMTQIKKDVYYQLEQTRKTNKNVTGIAKELKKLHRAGINNATNSVTVVAVLFATVAFAALFTVPGGDDNDGKAVMVHTVSFKMFFLSNATALFVSLAVVVVQITVVRGETKSERRVVEVINKMMWLASVCTSISFIAASYIIVGRRSLWAAILVTVVGSVIMAGILGTMTYYVVKSKRYRRVRKKEKLSRHGSQYSWRNSDSESTEVNPIYAI* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0444 578 Gene3D - 212 373 IPR036770 -
Lan9g0444 578 SMART ANK_2a 219 248 IPR002110 GO:0005515
Lan9g0444 578 SMART ANK_2a 151 180 IPR002110 GO:0005515
Lan9g0444 578 SMART ANK_2a 185 214 IPR002110 GO:0005515
Lan9g0444 578 SMART ANK_2a 61 90 IPR002110 GO:0005515
Lan9g0444 578 SMART ANK_2a 116 145 IPR002110 GO:0005515
Lan9g0444 578 SMART ANK_2a 287 317 IPR002110 GO:0005515
Lan9g0444 578 SMART ANK_2a 253 282 IPR002110 GO:0005515
Lan9g0444 578 MobiDBLite consensus disorder prediction 1 20 - -
Lan9g0444 578 ProSiteProfiles Ankyrin repeat region circular profile. 151 178 - -
Lan9g0444 578 ProSiteProfiles Ankyrin repeat region circular profile. 253 280 - -
Lan9g0444 578 PANTHER CASKIN 31 575 - -
Lan9g0444 578 ProSiteProfiles Ankyrin repeat profile. 151 178 IPR002110 GO:0005515
Lan9g0444 578 Pfam Ankyrin repeats (3 copies) 251 315 IPR002110 GO:0005515
Lan9g0444 578 Pfam Ankyrin repeats (3 copies) 66 176 IPR002110 GO:0005515
Lan9g0444 578 Pfam Ankyrin repeats (3 copies) 186 244 IPR002110 GO:0005515
Lan9g0444 578 ProSiteProfiles Ankyrin repeat region circular profile. 219 242 - -
Lan9g0444 578 Pfam Domain of unknown function 403 506 IPR026961 -
Lan9g0444 578 ProSiteProfiles Ankyrin repeat profile. 253 285 IPR002110 GO:0005515
Lan9g0444 578 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 31 575 - -
Lan9g0444 578 SUPERFAMILY Ankyrin repeat 66 348 IPR036770 -
Lan9g0444 578 Gene3D - 30 211 IPR036770 -
Lan9g0444 578 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0444 Lan-Chr9 6717994 6721887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0444 8 578 Miscellaneous Gene Families AT3G09550 72.959 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0444 - - gmx:100801840 823.542