Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0400 ATGGATGGACTTCGTAAGCATCAGGTATCATTGAGAGGAGCAAGTGCAAAGGAGATAACAAGAGATGACCTTCTTCAGAAGGTTTCCCGCGAAAGGGAGCTTCGCAATTATGCTAAACGCGCTGCTGCCGCTGCTCTCTTCATTCAGAGAGTATGGAGGCGCTTCAAGGTTACAAAAATGGTCGCCTTGAACCTCCAGCAGGAGTGGGAGATATCGGTGAATCATTATACTGGTGTGAGGACAGCAATTTGGATATCAAACAATTTGTTGAGACCGTTTCTTTTCTTTGTCACCTGTCTCCCAAATCGGCGTCAGAAGGTCGATAACAAGAAAATTGTCTCTTTGAAGATCGGCTTGACAATCCTAATGGAAAGCTTGAAGTCATCTGATTCCAAGCAGAACTTTTGCTGTCTGGCAATTGGTACAACTGAAGAGAGAAGGATATGGAGTTATCAGGCACAGAGGCTAACTTCTCTTGGCTTTCTCATTCTTTCAGAGTTAAGTGAATGCAATTCCGGGAACCAAGATATTACTATTGTTACATCTCTAGCAATGCGTGTTCTTGTTTTGTTAACTGATCCGAAAGGATGGAAAGGCATTACTGATGGCCCCCATCTAGATGCAGATTTAGCAGTGAAAGATTTAATTCAGTTTATGGGGAGTGATAAAAGTGGTTGTTATGTGTCTATTGCCAGATATATTCATGCATTGAATAGTAATTCTTCTCCGACAAAAAATATCAGTCAGGCGGATGAACTTTTTTTAATTACTGCAAGTGCAATAACTTTAGCTGTGCGGCCGTTTTATCTGACAAATTTTGATGTAAATGGGCCTAGTATGCTGGATGTTAATCATTCTGCTCAGCGGTATATTGTACACTTATTGACTATTCCTTGGCTCGTGAAACGTCTCCCATCTGTTCTTCAACCTGCTTTAAAGCACAAATCTATTTTGTTCCCGTGCTTCCAGACTCTATTGATTCATAAAGAGAATGTTTTATCGGAGATGTCAGAGTTGGTCCAGTCAGAGGTTCCTGTCTCGTTCAAGGCAATTCCGCCAGTTGGTTGGGCTCTCACTAACATTATATGCCTAGCAACAGGGAACGGGAATGATTCTGTGGGCTCTGGATCCTTCAATCAAGGTTTAGACATTGGATTGTATGTCCGTGTTGTTATCGCTCTAGCAGAAAGCCTACTGTCCTGTCTCGGTAATAATGGATGGACGACAAAGAAGAAGAAAGTCCTTCAACCCGATGTTGAAACTTCAACTCAGCCGGTTGATATGGTTCTACATGAGGGTGAAGCAACAACCTATGAGTCCTTAATAGTGTCATACATTGATCAGTTTCGACCTATTTGTCAGCAATGGCATCTTACAAATCTTTTAGCATCAATAAATACAGACGCCACTAACAAGCCTGAGATTACACTTTCCAATAGTCTTGAACATTTGAGGAAACTAGACTTGCATGATGTTACACTTTTACATTCTAATTTACTTAGAATACTTTCATCCTTGAGTCCAACCCGTGGCTCATTACCGGTTCTCAACATGCTATCCTTCACTCCGGGATATCTTGTCAGATTGTGGGATGTACTGGAGGATGCCTATTTTTCCGGAGACCAACATATTTCTGGTAATGACACAAGTGAAAAAAGAAAAGATAAAGATTTCAAGAAGATGCAAAAACAGGCAAGTAAGAACGGGGCTAATATGTGGGCCAGCGTGCTTAATAAATTTACAGGCAAGTCACAAGCTGCAACAGATTGTACAAATTCCATTGGTAGTTGCTCTGAGCCTAGCAATGTAAATGAGAATGATTCATCAGATATATGGGACATAGAACCTATGAGGTTTGGGCCACAAGGTATTCCAAAGGATAAATTTGCAACGCTTCATCTTTTCTGTGCGACCTATTCACACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCATTTAAACTAGAGCAGCAAAGAAGAATTGCATCGATGCTCAATACCCTAGTGTATAATGGATTATCCAATGTTAACGGTCATCATAATAGGCCCCTCATGGACTGTGCTATCAGATGCTTACATTTAATGTACGAAAGGGATTGCAGACACTCATTCTGCCCCCCTGCTTTGTGGCTTTCTCCTGGTAGAAAAAGTCGGCCACCAATTGCAGCTGCTGCCAGAACTCATGAAGTTTTATCAGCCAACCTAAGATCCAATGATTCATCATCAGCTGCCCTGAGTGTAGGTTCTGTCATCACAATGACTCCTCATGTTTTCCCTTTTGAAGAGAGAGTTGAGATGTTTCGCGAATTCATCAAGATGGACAAGAACTCCCGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGAGCAATTGGAGTAGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCGGCAATTAAACTCCCTCGGGTCAAGGTTGAAGTCATCTATCCATGTATCATTTGTCAGTGAATGTGGCCTTCCAGAGGCTGGCCTGGACTATGGCGGACTATCTAAAGAGTTTTTGACTGACATATCAAAAGCTGCCTTCACCCCGGAATATGGACTTTTTTCCCAAACCTCAACTTCAGATCGGCTTCTAATCCCAACTATATCTGCAAGATATTTGGATAATGGTCTTCAGATGATCGAGTTCCTTGGAAGAGTAGTTGGTAAAGCCCTGTATGAAGGAATATTACTTGATTATTCCTTCTCACATGTTTTTGTACAAAAGCTATTGGGTCGCTATAGCTTTCTCGATGAATTATCAACACTTGATCCAGAGCTGTACAGGAGTCTGATGTATGTCAAGAATTATGATGGTGATGTCGGGGAGCTCTGTCTTGATTTCACAGTTACTGAAGAATCATATGGCAAGATGAATGTGGTCGAGCTTAAGTCTGGCGGCAAAGATATTTCTGTAACAAATGACAACAAAATGCAGTACATTCATGCAATGGCAGACTACAAACTCAACCAACAGATATTGCCTTTTTCTAATGCATTTTATAAAGGGTTAACCGATCTTATATCTCCATCGTGGTTGAAGTTATTCAATGCTAGTGAGTTTAATCAGCTTCTTTCAGGTGGCAATTATGACATCGACATTGATGACTTGAAAAATAACACACGATATACCGGTGGTTACAATGAGGGAAGCCGGACAATCAAGATTTTTTGGGAGGTGATTAAAGGCTTTGAACCAAAAGAGCGCTGTTTGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCAGCTTTTACCATCCACAAGGTTGCATGTGATGTTCCTCTTTGGGCAACAATCGGAGGACAAGACGTCGATCGGCTTCCATCAGCTTCAACTTGCTATAATACTCTTAAGCTTCCAACATACAAACGTCCAGGGACATTGAGAACAAAGATTCTATATGCTATCAATTCAAATGCTGGATTTGAACTTTCTTGA 3498 0.4119 MDGLRKHQVSLRGASAKEITRDDLLQKVSRERELRNYAKRAAAAALFIQRVWRRFKVTKMVALNLQQEWEISVNHYTGVRTAIWISNNLLRPFLFFVTCLPNRRQKVDNKKIVSLKIGLTILMESLKSSDSKQNFCCLAIGTTEERRIWSYQAQRLTSLGFLILSELSECNSGNQDITIVTSLAMRVLVLLTDPKGWKGITDGPHLDADLAVKDLIQFMGSDKSGCYVSIARYIHALNSNSSPTKNISQADELFLITASAITLAVRPFYLTNFDVNGPSMLDVNHSAQRYIVHLLTIPWLVKRLPSVLQPALKHKSILFPCFQTLLIHKENVLSEMSELVQSEVPVSFKAIPPVGWALTNIICLATGNGNDSVGSGSFNQGLDIGLYVRVVIALAESLLSCLGNNGWTTKKKKVLQPDVETSTQPVDMVLHEGEATTYESLIVSYIDQFRPICQQWHLTNLLASINTDATNKPEITLSNSLEHLRKLDLHDVTLLHSNLLRILSSLSPTRGSLPVLNMLSFTPGYLVRLWDVLEDAYFSGDQHISGNDTSEKRKDKDFKKMQKQASKNGANMWASVLNKFTGKSQAATDCTNSIGSCSEPSNVNENDSSDIWDIEPMRFGPQGIPKDKFATLHLFCATYSHLLLVLDDIEFYEKQVPFKLEQQRRIASMLNTLVYNGLSNVNGHHNRPLMDCAIRCLHLMYERDCRHSFCPPALWLSPGRKSRPPIAAAARTHEVLSANLRSNDSSSAALSVGSVITMTPHVFPFEERVEMFREFIKMDKNSRKMAGEISEPGSRAIGVVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKAAFTPEYGLFSQTSTSDRLLIPTISARYLDNGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRSLMYVKNYDGDVGELCLDFTVTEESYGKMNVVELKSGGKDISVTNDNKMQYIHAMADYKLNQQILPFSNAFYKGLTDLISPSWLKLFNASEFNQLLSGGNYDIDIDDLKNNTRYTGGYNEGSRTIKIFWEVIKGFEPKERCLLLKFVTSCSRAPLLGFKYLQPAFTIHKVACDVPLWATIGGQDVDRLPSASTCYNTLKLPTYKRPGTLRTKILYAINSNAGFELS* 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0400 1165 Gene3D Hect, E3 ligase catalytic domain 1040 1164 - -
Lan9g0400 1165 SUPERFAMILY Hect, E3 ligase catalytic domain 799 1158 IPR035983 GO:0004842
Lan9g0400 1165 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 5 1165 - -
Lan9g0400 1165 Gene3D Hect, E3 ligase catalytic domain 923 1002 - -
Lan9g0400 1165 ProSiteProfiles HECT domain profile. 821 1165 IPR000569 GO:0004842
Lan9g0400 1165 Gene3D Hect, E3 ligase catalytic domains 800 1037 - -
Lan9g0400 1165 SMART hect_3 815 1165 IPR000569 GO:0004842
Lan9g0400 1165 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 5 1165 IPR044611 GO:0000209|GO:0061630
Lan9g0400 1165 CDD HECTc 799 1163 IPR000569 GO:0004842
Lan9g0400 1165 Pfam HECT-domain (ubiquitin-transferase) 852 1165 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0400 Lan-Chr9 5843278 5852552 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0400 K10588 - gmx:100527169 1874.75