Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0330 ATGCTTCATCATCCTCAAATTCCCCAAACTCAACAACCTCTTCAACCACAACACTACATTCCCACCTTTGAGGAACACTATAGAAACCTCTCCAAACTTCTTCTCTCTCTAACTCACTCTCGTTCCCTCCAAAAGGGTCTTCAAATCCATGCCCGTATCCTCAAATCAGGTCTTCAAGCTATTCCTCTTCTCTACCACCACCTAATCAACTTTTACTCGAAAACCCAACTTCCTCATTGTGCACACAAGGTGTTTGATGAAAGTCCTCACAGAAGTTCCACTACTTGGAGTTCTGTTATCTCTTCCTTTGCCCAAAATGAGCTCCCTTTATATGCCCTTGACTTTTTTCGCCGAATGCTCCTTCATGGGGTTCGGCCTGATGATCATATTTTTCCGAGTGCAACGAAGTCTTGCGCTATGTTGGCCCGGTTTGATGTCGGGCAATCGCTGCATTGCTTTGCTGTGAAAACTGCGTATGATAATGATGTGTTTGTTGGGAGCTCTATTGTTGATATGTATGCAAAATGTGGGGAGATAGCCTATGCTCGTAAGGTGTTTGATGGGATGCCGGAGAGGAACGTTGTTTCTTGGAGTGGGATGATATATGGGTATACACAGTTGGGTGAGGATGAGGAAGCTCTGAGGTTGTTTAAACAAGTGCTGGTGGAAGATGATGTGGGTGTTAATGATTTTACGTTGTCCAGTGTTTTGCGTGTTTGCAGTGGTTCCACGCTGTTCGAATTGGGGAAGCAGATACATGGGTTTTGTTTTAAGACAAGCTTTGATTCTTCGTGCTTTGTGGGTAGTTCGTTGATCTCGTTGTACTGTAAATGTGGGGTTGTTGAAGGGGCTTACCAGGTTTTCGAGGAGGTGCGGGTTAGAAACCTTGGCCTGTGGAATGCAATGCTGATTGGGTGTGCTCAGCACGCACACACAGATAAGACTTTCGAGCTTTTCAAACAGATGGGAATTGTTGGGATGAAGCCTAATTTCATTACCTTTTTGTCTGTGCTTTATGCTTGCAGCCATGCTGGGTTAGTAGAGAGGGGCAAATACTACTTTGAGCTGATGAAAGACTATGGTATTGAACCAGGGTGGCAACATTATGCCACCCTGGTGGATTTACTTGGCCGTGCCGGAAAATTGCAGGAGGCAGTTCAGGTGGTTAGAGAAATGCCAATGGGACCGACGGAATCTGTTTGGGGAGCTTTATTGACAGGGTGTAGAATACATGGGAATACTGAATTGGCATCCTATGTAGCTGATAGAGTTTTTGAGTTGGGTCCTGTAAGCCCAGGTGTTCATATCCTACTGTCTAATGCTTATGCTGCTGCAGGAAGATGGGAGGAAGCAGCAAGAGCACGGAAGACGTTGAGGGACCAAGGAATAAAGAAGGAAACTGGTTTGAGTTGGGTGGAGGAGGGAAACAGAATGCACACATTTGCCGCAGGAGATAGATCACACGCGAAAACCGCAGAAATTTATGACAAGTTAGAAGAGCTAGGAGAAGAAATGGAGAAAGCTGGTTATGTTGCAGACACGTCTTTTGTGTTGAAAGAAGTGGATGGTGATGAGAAGAATCAAACTATTAGGTATCATAGCGAAAGATTAGCCATAGCATTTGGCCTTGTTACTTTCCCTAAGGAAAGACCGATCAGAGTAATGAAGAATTTACGCGTTTGTGGTGATTGCCACACGGCAATCAAGTTCATTAGCAAATGTACTGGAAGAGTAATCATTCTGAGAGACAATAACAGGTTCCACCATTTTGAGGACGGAAAATGCACTTGTGGAGATTATTGGTGA 1806 0.4457 MLHHPQIPQTQQPLQPQHYIPTFEEHYRNLSKLLLSLTHSRSLQKGLQIHARILKSGLQAIPLLYHHLINFYSKTQLPHCAHKVFDESPHRSSTTWSSVISSFAQNELPLYALDFFRRMLLHGVRPDDHIFPSATKSCAMLARFDVGQSLHCFAVKTAYDNDVFVGSSIVDMYAKCGEIAYARKVFDGMPERNVVSWSGMIYGYTQLGEDEEALRLFKQVLVEDDVGVNDFTLSSVLRVCSGSTLFELGKQIHGFCFKTSFDSSCFVGSSLISLYCKCGVVEGAYQVFEEVRVRNLGLWNAMLIGCAQHAHTDKTFELFKQMGIVGMKPNFITFLSVLYACSHAGLVERGKYYFELMKDYGIEPGWQHYATLVDLLGRAGKLQEAVQVVREMPMGPTESVWGALLTGCRIHGNTELASYVADRVFELGPVSPGVHILLSNAYAAAGRWEEAARARKTLRDQGIKKETGLSWVEEGNRMHTFAAGDRSHAKTAEIYDKLEELGEEMEKAGYVADTSFVLKEVDGDEKNQTIRYHSERLAIAFGLVTFPKERPIRVMKNLRVCGDCHTAIKFISKCTGRVIILRDNNRFHHFEDGKCTCGDYW* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0330 601 PANTHER BNAA10G28390D PROTEIN 7 544 - -
Lan9g0330 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Lan9g0330 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Lan9g0330 601 Pfam DYW family of nucleic acid deaminases 509 601 IPR032867 GO:0008270
Lan9g0330 601 Pfam E motif 411 473 IPR046848 -
Lan9g0330 601 Pfam E+ motif 479 505 IPR046849 -
Lan9g0330 601 Pfam PPR repeat 332 362 IPR002885 -
Lan9g0330 601 Pfam PPR repeat 369 392 IPR002885 -
Lan9g0330 601 Pfam PPR repeat 269 295 IPR002885 -
Lan9g0330 601 Pfam PPR repeat 167 194 IPR002885 -
Lan9g0330 601 Pfam PPR repeat 195 220 IPR002885 -
Lan9g0330 601 Pfam PPR repeat 95 124 IPR002885 -
Lan9g0330 601 Pfam PPR repeat 299 322 IPR002885 -
Lan9g0330 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Lan9g0330 601 PANTHER OS01G0913400 PROTEIN-RELATED 7 544 - -
Lan9g0330 601 SUPERFAMILY TPR-like 399 460 IPR011990 GO:0005515
Lan9g0330 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Lan9g0330 601 TIGRFAM PPR: pentatricopeptide repeat domain 95 127 IPR002885 -
Lan9g0330 601 TIGRFAM PPR: pentatricopeptide repeat domain 332 365 IPR002885 -
Lan9g0330 601 TIGRFAM PPR: pentatricopeptide repeat domain 195 220 IPR002885 -
Lan9g0330 601 TIGRFAM PPR: pentatricopeptide repeat domain 299 330 IPR002885 -
Lan9g0330 601 TIGRFAM PPR: pentatricopeptide repeat domain 369 392 IPR002885 -
Lan9g0330 601 Gene3D Tetratricopeptide repeat domain 345 540 IPR011990 GO:0005515
Lan9g0330 601 Gene3D Tetratricopeptide repeat domain 254 343 IPR011990 GO:0005515
Lan9g0330 601 Gene3D Tetratricopeptide repeat domain 145 253 IPR011990 GO:0005515
Lan9g0330 601 Gene3D Tetratricopeptide repeat domain 21 144 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0330 Lan-Chr9 5113419 5115588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0330 23 601 Glycoside Hydrolase AT3G49170 37.797 1.28e-136 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0330 - - lang:109356914 1203.35