Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0328 ATGTCCCTCCAAAGACATCTTCTTCTCTCATTCATCATCATTATTGTTTCTTGTGGTTCTTGTTATTGTAGCAAAGTACAAGAGGGCCCACTTAGTAGTATATATGTTCATGATTCACCTTCCATTGATGATGATTATGGGTGGATATTCAAGAACTTTATCAAACGAACCATAGATTTTTTTAGCTCCAATGAAGTTGTCAAAGTGGGTTATACTAAACCTTCACTTAGAACTATTAATGTCAATGATTTTGGAGCTAAAGGGAATGGTATTGATGATAATTCAGTGGCATACATGGAGGCTTGGCAAGCAGCATGTTCTTCTGGGGATGTAGTTCTTGTTGTTCCTGAGGGAAATTATCTTCTCAAACCAATCAGATTCTCTGGTCCTTGTAAATCTAACATTACACTTCAGATATCTGGGACCCTTGAAGCATCAGATGATAGATCAGATTACAGTGGATATTTCAGAAGATATTGGCTTATATTTGATAGTGTTGAGAAACTATCAGTTAATGGTGGTGGGACCCTCAATGGAAATGGCAACATGTGGTGGGAAAACTCATGCAAAAGGAACAAAAAGAAGCATTGCAAGGATGCCCCTACGGCTGTGACATTCTATAAGTGCAGGGATTTAACAGTTGAAGACTTAACTATAGTAAATGCCCAACAAATGCATGTTAGAATTCAGGATTCTGTGAATGTGAATGCATCTGGTCTCAAAGTGATTGCACCAGAGAGTAGCCCTAACACTGATGGGATTCATGTTACCAATAGCCAAATTGTACAAATCTCAAGCTCCATTATAGGAACTGGTGATGATTGTATATCAATTGTAGACGGAACCAGTGATTTAATAGCCACAGACATAACCTGTGGACCAGGGCATGGTATTAGTATTGGAAGTTTAGGGGCTAGAGGTGCCAAGGAATTTGTTACAGGAATAAAAGTGAATGGAGCTAAGCTTTCTGGTACTAAAAATGGAGTTAGAATTAAGACTTGGCAGGGAGGTTCAGGAATGGCAAGCAACATTGAGTTTAGGAACATTGAAATGGACAATGTGACAAACCCCATAATAATAGACCAGAATTATTGTGACAAAAAGGAGCCATGCCAAAAACAGAAATCTGCGGTTCAGATTAAGAATGTGTTGTACCAAAACATCAGTGGTACAAGTGCTTCTGATGTAGCTGTGAAATTTGATTGCAGTGAAAGCTTTCCATGCAAGGAGATAATAATGCAAAATATAGATCTGCAAGGTGAAGAAGGAAAATATGTTGAAGCTTCATGCAACAATGTTCAATTGTCTTACTTAGGAGATGTTAACCCTAGTTGTTGTTCATAG 1344 0.3817 MSLQRHLLLSFIIIIVSCGSCYCSKVQEGPLSSIYVHDSPSIDDDYGWIFKNFIKRTIDFFSSNEVVKVGYTKPSLRTINVNDFGAKGNGIDDNSVAYMEAWQAACSSGDVVLVVPEGNYLLKPIRFSGPCKSNITLQISGTLEASDDRSDYSGYFRRYWLIFDSVEKLSVNGGGTLNGNGNMWWENSCKRNKKKHCKDAPTAVTFYKCRDLTVEDLTIVNAQQMHVRIQDSVNVNASGLKVIAPESSPNTDGIHVTNSQIVQISSSIIGTGDDCISIVDGTSDLIATDITCGPGHGISIGSLGARGAKEFVTGIKVNGAKLSGTKNGVRIKTWQGGSGMASNIEFRNIEMDNVTNPIIIDQNYCDKKEPCQKQKSAVQIKNVLYQNISGTSASDVAVKFDCSESFPCKEIIMQNIDLQGEEGKYVEASCNNVQLSYLGDVNPSCCS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0328 447 Pfam Glycosyl hydrolases family 28 111 434 IPR000743 GO:0004650|GO:0005975
Lan9g0328 447 ProSitePatterns Polygalacturonase active site. 289 302 IPR000743 GO:0004650|GO:0005975
Lan9g0328 447 Gene3D - 66 442 IPR012334 -
Lan9g0328 447 PANTHER ENDO POLYGALACTURONASE 7 446 - -
Lan9g0328 447 PANTHER - 7 446 - -
Lan9g0328 447 SMART pbh1 312 333 IPR006626 -
Lan9g0328 447 SMART pbh1 259 280 IPR006626 -
Lan9g0328 447 SMART pbh1 341 362 IPR006626 -
Lan9g0328 447 SMART pbh1 209 258 IPR006626 -
Lan9g0328 447 SUPERFAMILY Pectin lyase-like 71 446 IPR011050 -
Lan9g0328 447 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0328 Lan-Chr9 5070923 5075144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0328 39 447 Glycoside Hydrolase AT2G41850 53.253 1.08e-141 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0328 K01184 - gmx:100817828 595.119