Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1957 ATGAGATTGAGGACAGGTATAGCTCATGTAAATAAATGTTTGTTGAGAGGGAGAGTGAATTGTTATTATTCAACAAGTATTATTGAATTTCACAAGTCACAAGAAGAAAAAGAACAAGATCTCATTCGTTATTGCTTGTGGTTACGACAAAGGAATGATCCTCATCCTCATGCAGTCAAACTCATTCACTCTCACTCTATCAAACAAGGCTATCATCACTTCACCCCTTTCTCTCACTCTTCTCTTATTCATATGTATGCTAAATGTAACTGCCTCACTCATGCTCGCGCCATTTTTGACACTTCACCTCATTTGGACACTGTTTCCTGCACTGCTCTCATCTCTGCTTATGTTCGATGTGGTTTTCCTCACCTCGCCCTCCAACTATTTGACAAAATGCACAACTCTGGTTGTTACCCAGACCAAGTGCTTTTAGTCACTCTCATCAATGCCTATATCAATTTAGGAAACCTCCATGATGCCTTCCGTTTGTTTCAACAGATTCCCTCTCCCAATGTTGTCGCATGGAATGTCATGATTTCTGCTCATGCTAAAACAGGCCATTACAACGACGCTCTTGCCTTCTTTCGTCAAATGAGGAAGGATGACGTCAAATCCTCAAGGTCCACCCTCGGAAGTGTTTTAAGTGTGATTGCCACCTTGGCTGCTTTACATGATGGCCTCTTAGTTCATGCCGAGGCTATCAAGCAAGGTTTGGATTGCAATGTTTATGTTGGGAGTTCTTTGATCAATATGTATGGGAAATGTGAAATGGTAGATGCTGCAAAGCGAGTATTTGATGCTATATCTGACAAGAATGGAGTTGTGTGGAATGCTATGCTGGGAGTTTATGCACACCGTGGTTATTTAAGTAATGTCATGGACTTGTTCTTCAATATGACGAGATGTGGCATTGACCTGGATGAATTTGCATACACTAGCATTTTGAGTTCATGTGCTTGCTTTCAGTACATTGAAATTGGTCACCAGATGCATTCCACTATTATCAAGACTAGATTTGCAACCAATTTATTTGTTAACAATGCATTGATAGATATGTATGCGAAGGCTGGGGCCCTGAACGAAGCTAGGAGACTGTTTGAGCACATGAAAGCCCGAGATAATGTTTCCTGGAATGCCATTATTGTTGGATATGTGAAAGAAGAAGAGGAGATGGATGCTTTCAACATGTTTCAGAGAATGACTTTGCATGGCACAGTACCTGACGAGGTATCGTTGGCTAGTATACTTAGTGCTTGTGGGAATGTTAAGGTCCTACAAACAGGACTGCAGTTCCATTGTCTGTCGGTTAAGTTGGGTTTAGAAACAAACCTTTTTGCTGGAAGTTCTCTTATAGACATGTATTCTAAGTGTGGGGCCATTGAAGATGCACGGAAAATCTATTCTACCATGCCTGAGTGGAGTGTGGTCTCCATGAATGCTCTGATCGCAGGATATGCTCTAAACGACACTAGAGAAGCTATTAACCTTCTTCATGAGATGCAGATACTGGGATTGAAGCCATCTGAAATTACATTTGCAAGCCTCATAGATGCTTGTAAGGGGTCTCCTAAGGTAATCTTAGGCATGCAGATCCATAGTGCTGTACTGAAGAGGGGTCTTTTATGTGGAAGTGAATTCTTAGGTACCTCTTTGTTGGTAATGTATATGGACTCAGAAAGGATTGCAGATGCAAGCATTCTTTTCTCTGAGTTTTCTAACCTTAAAAGCACTGTACTGTGGACTGCTTTAATATCTGGACTTACTCAAAATGATTGCAGTGATGAGGCCTTAAACTTGTATAGAAGAATGCGTGACAATAATATCTTACCTGACCAAGCAACATTTGTCACCGTTCTTCGAGTTTGTGCTCTCTTATCCTCATTGCAAGATGGAGCAGCAATACATTCTTTAATTTTCCATACTAGTTTTGACTTAGATGAGTTAACCAGCAGTGCCCTTGTAGACATGTATGCTAAATGTGGCGATATCAAAAGTGCTGTGCAAGTTTTTGAAGAATTGAGTATTAAAAAGAATGTAATTTCCTGGAACTCAATGATAGTTGGATTTGCTAAAAATGGTTATGCAGAAAGTGCCCTAAAGGTCTTTGATGAGATGACTCAATCATATGTTACACCAGATGATGTCACCTTCCTTGGAGTGCTTACTGCCTGTAGCCATGCAGGGTGGGTTTTTGAGGGTAGACAAATTTTCGATGCCATGGTTAACTTTTATGGCATTGAGCCCAGAGTGGATCACTATGCCTGCATGGTTGATCTTCTGGGTCGGTGGGGTTTTCTCAAAGAAGCTGAGGAGTTCATTGACAAACTAGATATTGAACCCAATGCTATGGTTTGGGCTAATTTATTGGGAGCTTGCAGATTACATGGAGACGACACAAGAGGGAAACGCGCAGCTAAGAAACTTTTTGAGTTAGAACCCAAGAATTCTTCTCCATATGTTCTGCTTTCTAATATGTATGCTTCATCAGGACATTGGGATGAAGCTAAATCTTTGAGGAGAGCAATGATGGAAAAAGAAATCCAAAAGATGCCTGGACGTAGCTGGGTTGTAGTGGGGCAAAACACAACCTCGTTTGTTGCAGGTTATGATATATCACATCCTAGTTCTGATGAAATTTCACAAGCTTTGAAGCATCTCACAGCACTAATGAGAGACAATAGATTCCAGGAAGATGTTGGTCAAATTTAG 2712 0.4078 MRLRTGIAHVNKCLLRGRVNCYYSTSIIEFHKSQEEKEQDLIRYCLWLRQRNDPHPHAVKLIHSHSIKQGYHHFTPFSHSSLIHMYAKCNCLTHARAIFDTSPHLDTVSCTALISAYVRCGFPHLALQLFDKMHNSGCYPDQVLLVTLINAYINLGNLHDAFRLFQQIPSPNVVAWNVMISAHAKTGHYNDALAFFRQMRKDDVKSSRSTLGSVLSVIATLAALHDGLLVHAEAIKQGLDCNVYVGSSLINMYGKCEMVDAAKRVFDAISDKNGVVWNAMLGVYAHRGYLSNVMDLFFNMTRCGIDLDEFAYTSILSSCACFQYIEIGHQMHSTIIKTRFATNLFVNNALIDMYAKAGALNEARRLFEHMKARDNVSWNAIIVGYVKEEEEMDAFNMFQRMTLHGTVPDEVSLASILSACGNVKVLQTGLQFHCLSVKLGLETNLFAGSSLIDMYSKCGAIEDARKIYSTMPEWSVVSMNALIAGYALNDTREAINLLHEMQILGLKPSEITFASLIDACKGSPKVILGMQIHSAVLKRGLLCGSEFLGTSLLVMYMDSERIADASILFSEFSNLKSTVLWTALISGLTQNDCSDEALNLYRRMRDNNILPDQATFVTVLRVCALLSSLQDGAAIHSLIFHTSFDLDELTSSALVDMYAKCGDIKSAVQVFEELSIKKNVISWNSMIVGFAKNGYAESALKVFDEMTQSYVTPDDVTFLGVLTACSHAGWVFEGRQIFDAMVNFYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLDIEPNAMVWANLLGACRLHGDDTRGKRAAKKLFELEPKNSSPYVLLSNMYASSGHWDEAKSLRRAMMEKEIQKMPGRSWVVVGQNTTSFVAGYDISHPSSDEISQALKHLTALMRDNRFQEDVGQI* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1957 903 Gene3D Tetratricopeptide repeat domain 732 850 IPR011990 GO:0005515
Lan8g1957 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 577 611 IPR002885 -
Lan8g1957 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 816 850 IPR002885 -
Lan8g1957 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Lan8g1957 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Lan8g1957 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 373 IPR002885 -
Lan8g1957 903 Pfam E motif 797 857 IPR046848 -
Lan8g1957 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Lan8g1957 903 SUPERFAMILY TPR-like 144 841 IPR011990 GO:0005515
Lan8g1957 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Lan8g1957 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 679 713 IPR002885 -
Lan8g1957 903 PANTHER OS07G0578800 PROTEIN-RELATED 371 474 IPR045215 GO:0003723|GO:0009451
Lan8g1957 903 PANTHER OS07G0578800 PROTEIN-RELATED 60 155 IPR045215 GO:0003723|GO:0009451
Lan8g1957 903 PANTHER OS07G0578800 PROTEIN-RELATED 474 544 IPR045215 GO:0003723|GO:0009451
Lan8g1957 903 PANTHER OS07G0578800 PROTEIN-RELATED 547 640 IPR045215 GO:0003723|GO:0009451
Lan8g1957 903 PANTHER OS07G0578800 PROTEIN-RELATED 154 373 IPR045215 GO:0003723|GO:0009451
Lan8g1957 903 PANTHER OS07G0578800 PROTEIN-RELATED 643 898 IPR045215 GO:0003723|GO:0009451
Lan8g1957 903 Pfam PPR repeat family 171 215 IPR002885 -
Lan8g1957 903 Pfam PPR repeat family 273 320 IPR002885 -
Lan8g1957 903 Pfam PPR repeat family 576 623 IPR002885 -
Lan8g1957 903 Pfam PPR repeat family 475 520 IPR002885 -
Lan8g1957 903 Pfam PPR repeat family 678 726 IPR002885 -
Lan8g1957 903 TIGRFAM PPR: pentatricopeptide repeat domain 376 410 IPR002885 -
Lan8g1957 903 TIGRFAM PPR: pentatricopeptide repeat domain 348 374 IPR002885 -
Lan8g1957 903 TIGRFAM PPR: pentatricopeptide repeat domain 174 205 IPR002885 -
Lan8g1957 903 TIGRFAM PPR: pentatricopeptide repeat domain 108 141 IPR002885 -
Lan8g1957 903 TIGRFAM PPR: pentatricopeptide repeat domain 681 709 IPR002885 -
Lan8g1957 903 TIGRFAM PPR: pentatricopeptide repeat domain 579 612 IPR002885 -
Lan8g1957 903 Gene3D Tetratricopeptide repeat domain 629 731 IPR011990 GO:0005515
Lan8g1957 903 Gene3D Tetratricopeptide repeat domain 427 526 IPR011990 GO:0005515
Lan8g1957 903 Gene3D Tetratricopeptide repeat domain 221 323 IPR011990 GO:0005515
Lan8g1957 903 Gene3D Tetratricopeptide repeat domain 527 628 IPR011990 GO:0005515
Lan8g1957 903 Gene3D Tetratricopeptide repeat domain 324 426 IPR011990 GO:0005515
Lan8g1957 903 PANTHER OSJNBB0070J16.5 PROTEIN 371 474 - -
Lan8g1957 903 PANTHER OSJNBB0070J16.5 PROTEIN 474 544 - -
Lan8g1957 903 PANTHER OSJNBB0070J16.5 PROTEIN 547 640 - -
Lan8g1957 903 PANTHER OSJNBB0070J16.5 PROTEIN 154 373 - -
Lan8g1957 903 PANTHER OSJNBB0070J16.5 PROTEIN 643 898 - -
Lan8g1957 903 PANTHER OSJNBB0070J16.5 PROTEIN 60 155 - -
Lan8g1957 903 Gene3D Tetratricopeptide repeat domain 50 220 IPR011990 GO:0005515
Lan8g1957 903 Pfam PPR repeat 247 269 IPR002885 -
Lan8g1957 903 Pfam PPR repeat 449 474 IPR002885 -
Lan8g1957 903 Pfam PPR repeat 376 405 IPR002885 -
Lan8g1957 903 Pfam PPR repeat 108 138 IPR002885 -
Lan8g1957 903 Pfam PPR repeat 147 168 IPR002885 -
Lan8g1957 903 Pfam PPR repeat 652 674 IPR002885 -
Lan8g1957 903 Pfam PPR repeat 348 373 IPR002885 -
Lan8g1957 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1957 Lan-Chr8 25480055 25483064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1957 179 887 Glycoside Hydrolase AT3G49170 32.871 7.06e-128 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1957 - - gmx:100800995 1281.54