Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1926 ATGTCCCAGCTTAACACCCCTGATGAGTTAATCATGAGTCCTAATAATTTTGTTGTTGGGTCTAATAACACTTCATCATCTTCCTTACCCTTTTATCATCATGCTAGTGGAAGAGTTTCAGATCCAATTGATGAGTTCCAACTTCAAGACCAACTTTCTTTTTTGAATGATGGTTATGATCCTCTTAAGAACCATGATTTGTTTTACCATAATCACTCTGACTTGTATTCAAGTCCAAGTAGTGGTGCTGACCCTAATCTTTTACCTTCCTATGGTTGGGGAGGAGGGTCTCTTCATAGAAGTAGTTCTTCTGTTAATAATGCTTGCTTGGGTTCTGAGGACCCGAATTCGGGGTTTGGGTGGAAGCCTTGTCTTTACTTTGCTAGAGGCTATTGCAAAAATGGTACTAGTTGTAGGTTCCTTCATGGAGGAGGAGGAGGAGGAATTGGAGATGCTGATATTGCAATGGTTGGTTCCCCTAACAAGATTGAGATGATGGATCAATGCCATGAGCTTCTCAGATCTAAGACTGCTCAACACCAAAGACTTGCTGCTGCTTCTCAACTCATGGCATCTTCTTTTCCATACTCACCAAAGTGCATGAATATGCTATTAGAGCAACAACAAAATGATTCTCCAAGAGGAGCAGTTACAGCTCTTATGATGAATGAAGAGTTGCACAAGTTTGGAAGGTCTAGGCTTGAAAGGAATGATTTTTCTTTGATCAGTCCTGAAATGGTTAATCCGGCTTCAAGGCAGATCTACTTGACTTTTCCCGCAGATAGCACTTTCAGGGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCTGTTCAGGATGTGAGGATCCCGTATCAGCAGAAGCGTATGTTTGGATTTGTTACCTTTGTTTATCCGGAGACTGTGAAGCTCATACTATCTAAAGGGAACCCTCATTTTGTGTGTGATGCTAGAGTGCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCTAGAAAAGAAGCAACAGCAACAGGTAGATAGGGTAGATTTTTCACCTTGTGGTACTCCTCCTAGACTAGATGCTAGAGATCATTTTGATCTCCAACTTGGAGGTAGAATGTTTTGCAATACTCAAGACATGCTGTGGAGGAGGAAGTTGGAGGAGCAAGCTGATTTTCAGCAAGCTCTTGAGCTTCAAAGTAGAAGGTTAATGGGTCTGCAACTTCTTGACATCACGAAGCAACACCATCGTGCACTCTCAACCGGAAGTCCAATGCCTTCCCTTACTCGCTCTCCTAGTATGTTCAATCAAAACCTTGGTTTCCCATTGTTTCATAGCAGCTCAGAGACCTGGAAGGATAGTGGTTCAAGTTCAGATCCAGCTAGTAGTAATGCATCAGTGAACACTTCCTTGCTAAAGGAAGTGATTGGTAATGGAGAAAATGGATATAATGATGGCAATGGCAAGAGCTCTAGTCATGAAGAGTGTGATTTGCAGGAATGTTTGGATCATAATCTCCCTGATAGCCCTTTTGCTTCCCCTACTAAAGCTGGTGGTGGTGACTGCATTGCTGCCTTCTCCAATGGACCTATCGAGGCCATTGATTCAGATGCATCAGCTGCATCTTCCAACTCTAAATTTGGTACCACCACATTGCTCCCATCACCATCTTCTCTGGACACAGGCTCTTTCAAATCCTTTAATTGCCAAATTCCAAGGTTCTCTTCTGGCCATGGAACTATTGGCATGTTTGCCGGCACAGGCCGACCGATTGGCATTTAG 1767 0.4284 MSQLNTPDELIMSPNNFVVGSNNTSSSSLPFYHHASGRVSDPIDEFQLQDQLSFLNDGYDPLKNHDLFYHNHSDLYSSPSSGADPNLLPSYGWGGGSLHRSSSSVNNACLGSEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGGGGIGDADIAMVGSPNKIEMMDQCHELLRSKTAQHQRLAAASQLMASSFPYSPKCMNMLLEQQQNDSPRGAVTALMMNEELHKFGRSRLERNDFSLISPEMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVLEKKQQQQVDRVDFSPCGTPPRLDARDHFDLQLGGRMFCNTQDMLWRRKLEEQADFQQALELQSRRLMGLQLLDITKQHHRALSTGSPMPSLTRSPSMFNQNLGFPLFHSSSETWKDSGSSSDPASSNASVNTSLLKEVIGNGENGYNDGNGKSSSHEECDLQECLDHNLPDSPFASPTKAGGGDCIAAFSNGPIEAIDSDASAASSNSKFGTTTLLPSPSSLDTGSFKSFNCQIPRFSSGHGTIGMFAGTGRPIGI* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1926 588 SUPERFAMILY RNA-binding domain, RBD 263 342 IPR035979 GO:0003676
Lan8g1926 588 ProSiteProfiles Zinc finger C3H1-type profile. 118 145 IPR000571 GO:0046872
Lan8g1926 588 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 22 576 - -
Lan8g1926 588 CDD RRM_AtC3H46_like 254 323 IPR034365 -
Lan8g1926 588 SMART c3hfinal6 120 144 IPR000571 GO:0046872
Lan8g1926 588 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 309 IPR000504 GO:0003723
Lan8g1926 588 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 123 143 IPR000571 GO:0046872
Lan8g1926 588 SMART rrm1_1 253 323 IPR000504 GO:0003723
Lan8g1926 588 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 339 IPR000504 GO:0003723
Lan8g1926 588 SUPERFAMILY CCCH zinc finger 121 143 IPR036855 GO:0046872
Lan8g1926 588 Gene3D - 112 185 - -
Lan8g1926 588 Gene3D - 257 331 IPR012677 -
Lan8g1926 588 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 22 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1926 Lan-Chr8 25312570 25316314 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1926 - - lang:109355593 1170.61