Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1925 ATGTTCCTGTTTGGGTCATTTAGTGAAGATGAAACCAAATCATTACTGCAAAAGCAGTCTTCTGGCTCTGAGGGAAAGGAAAACTCTGCGGAGAAGAATCAGCTGCAATTTGGTTCTCTGGGTCTTGTCACTGTTGATCCAAGTAACCTGCCAAAGTCACCAAAAGCACCAAACAGTGCTTGTCCCTCTGATTCTCAGAAATGCAATGGTGTGAGCAGTGCCAGCATTGCCAAAAATTTACCTGGAGCGTCAAAAACTATAAAAGAGAATGGCAGGATTACTAACTTCTCCCTTGGCCCCTCTAGTACCATTACTGTAAGCGAAGTTAAAGAGCACAATGTGCATCCAGTTACATTACTTGATGAAGATGGTAACTCCAACCATTTTTCAAATTTGAGCCTGGCTGTTCCTGGGGCTGAAAGCCTGAAGAATGCACATAAAGTTGGCAGTGGTCTTGATTCTTCATCAAAATTATCTGATCAAGATTCCAAAAAGGCACCTAATGGGCATATTGTTACACACACTAGGGACATACTGCCTCGAGGCCTTATTAACTCTGGGAATTTATGCTTTGTTAATGCAACCATGCAGGCACTGTTGTCTTGTTCTCCTTTTGTTCAGCTTTTGCAGGAATTAAGGACTCGCAACATTCCTAAGGTTGGCTATCCCACATTGACCGCATTTGCTGAGTTTATCACTCAATTTGATTCCCCTAGCACAACAATATTAAAGAAGAAAGATACAGATACTTTTGAGACTGGAAGACCATTTCGCCCTGTTATGTTTGAAGGTGTTCTAAAAAAATTTACTCCTGATGTGCCAAATAGCATGTCAGGGAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTACTAAAGCTTGAAGGTAAGTCTTCAAGTCTTACTGGTAGCAATTCTTCTCTTGTTTCCTCTGTGGAAGATGATGAATGGGAAACAGTGGGACCGAAGAATAAATCTGCTGTAACAAGGATTCAAAGTTTTGCACCGTCAGAGTTAAGTGATATTTTTGGAGGACAACTACAAAGTATGGTGAAAGCTAAAGGAAATAAACCTTCTGCCACTGTTCAACCTTACCTCTTGCTCCATCTCGACATTCATCCTGATACTGTCCACACGATCGAGGATGCATTTCACTTGTTTTCTACACCAGAAACTGTTGAAGGGTACCGAACATCCCTCACTGGAAAGGCTGGTGTTGTGACTGCAAGAAAAGATGTACACATACAGACACTACCAAAAGTAATGATACTACACCTGATGCGTTTTGGTTATGGAAGCCAGGGAAGCACTAAGTTGCTTAAGCCTGTGCACTTTCCTCTGGAGTTGACATTGGCTCGTGACTTGCTTGTTTCACCATCTAATGAGGGTCGGAAGTATGAACTTGTTGCTACAATTACTCATCATGGATGGGAACCTTCAAAGGGGCACTACACAGCTGATGCCCTGTACCCCAATGGTCAGTGGCTACGATTTGATGATTCATCTGTCTTTGTTATTGGAGCAAGTAAGGTGCTGCATGATCAGGCATATGTCCTTTTCTACAAGCGGATGTGA 1605 0.4231 MFLFGSFSEDETKSLLQKQSSGSEGKENSAEKNQLQFGSLGLVTVDPSNLPKSPKAPNSACPSDSQKCNGVSSASIAKNLPGASKTIKENGRITNFSLGPSSTITVSEVKEHNVHPVTLLDEDGNSNHFSNLSLAVPGAESLKNAHKVGSGLDSSSKLSDQDSKKAPNGHIVTHTRDILPRGLINSGNLCFVNATMQALLSCSPFVQLLQELRTRNIPKVGYPTLTAFAEFITQFDSPSTTILKKKDTDTFETGRPFRPVMFEGVLKKFTPDVPNSMSGRPRQEDAQEFLSFVMDQMHDELLKLEGKSSSLTGSNSSLVSSVEDDEWETVGPKNKSAVTRIQSFAPSELSDIFGGQLQSMVKAKGNKPSATVQPYLLLHLDIHPDTVHTIEDAFHLFSTPETVEGYRTSLTGKAGVVTARKDVHIQTLPKVMILHLMRFGYGSQGSTKLLKPVHFPLELTLARDLLVSPSNEGRKYELVATITHHGWEPSKGHYTADALYPNGQWLRFDDSSVFVIGASKVLHDQAYVLFYKRM* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1925 534 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 182 197 IPR018200 GO:0004843|GO:0006511
Lan8g1925 534 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 534 - -
Lan8g1925 534 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 534 - -
Lan8g1925 534 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 476 494 IPR018200 GO:0004843|GO:0006511
Lan8g1925 534 MobiDBLite consensus disorder prediction 1 68 - -
Lan8g1925 534 MobiDBLite consensus disorder prediction 10 43 - -
Lan8g1925 534 MobiDBLite consensus disorder prediction 145 168 - -
Lan8g1925 534 Pfam Ubiquitin carboxyl-terminal hydrolase 182 531 IPR001394 GO:0004843|GO:0016579
Lan8g1925 534 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 181 534 IPR028889 -
Lan8g1925 534 SUPERFAMILY Cysteine proteinases 177 533 IPR038765 -
Lan8g1925 534 MobiDBLite consensus disorder prediction 51 68 - -
Lan8g1925 534 Gene3D Cysteine proteinases 169 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1925 Lan-Chr8 25303634 25309616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1925 178 534 Miscellaneous Gene Families AT2G24640 27.824 6.81e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1925 K11841 - gmx:100799656 785.793