Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1917 ATGGGACTTCTTAGCTTTGATATCAATGCCATTTCTCCTTCTACTTTTCATTATGCTTCCATTTCCTCTTTCTCTTCATACGCAATTCCAATTTCTCCGATACCCTTTTCAGGTAATGTTCTCAATACCAGAGTTTTAACCAAGTTTCACCTTTTTTATTCCCCCAACCTCAAATTTGTGCTGCCACTCAGTGCTTCCTCGCTCAATGATGCTTCCAATGTTGGGTTGGTTAGTGACGCGATTAATCCTAAAGACTTGGAATTTAAGCCTTCCTTTGATGAATATTTGAAGGCTATGGAATCCAGAACTTCAAGGAAGAAAAAGCGTGCTTCTACTACTGATACCACATCTCAAAAACAGAATGTGAGGGAAAAGGGAGAAGAAGGTGATAAAAAAGTTGAAAGGGTTGGAGAGAAAATTGATGGAAAAGAAGAGTTTGAAGCTGCTAAAGAGGACGGGAAAACTATAGCTATGTATAAAGAAGAACGTTCATCGACCAGTGATGTTACTGTGAGACAGAGAAATACTAAAGGGTTTAAAAATGAGCACGGTAGGAAAGAAAGCCAAATTGATGTAAAGGGAAAGCAGAAACGTGAGGCAAATGTAAGAGAAGATGTGTGGTCGAAACAAAAGAGTCATGATAGTTTAGAACCTGAATCTGACGGCAAAAGTGGGAGTGGAAGTGGTAGGATAAGCAATAGCATAACCAGGCCTAATTCAAATTATAGCCTCGGAGAGAAGGTAGTTAGTAACAGACAAAGGGATTACAATACACATGGTAAAGGTTCTGGTGGAAATAAGACTGTAGTTAGAAATAAAGTTATGGACACAGGGGCTGGGAGAAGAAATACTGAGATTGAGAGTGTTGTGAACAGAAGCGTACCGGAAAATGTCAAACTGAATAGAAACAGTAAGCGTTTCATTGACAGGGGCTATGATTCTGACAATGTGGAGGTGGAACGAGCTGCATTCACGAACTTGGAGGTTATCAACAGGATACAATTTTCACACAAGGAACTGGAGGAGAGAATCCAAAAGCTTGCAAGATTGTTGAATGGCACAGATATCGATTTGCCTGAATGGTTGTTCTCTAAAGCGATCAGAAGTGCGAAAATCAAATTTAATGACTACTCTATAACTAGGGTTATCATACTCTTGGGAAATCTAGGGAACTGGCAGCGGGTGATACAGGTTATTGAATGGCTTCAAAGGCGTGAGCGTTTCAAATCCAATAAGCTAAGGCATATATACACTGCTGCTCTTGATGTCCTCAGAAAGTCAAGGAGACCTGTAGAGGCACTAAATATGTTTAATGCAATGCTGCAACAAATGGCCACATATCCTGATTTAGTAGCTTATCGTAGTATTGCTGTTACTCTTGGACAAGCAGGGCATATGAAGGAACTCTTCGATGTGATTGATATTATGCGATCACCGCCAAAAAAGAAGTTCAAAACAGGGCCATTTGAGAAGTGGGACCCAAGGCTGGAGCCAGATAGTGTAGTCTATGATGCAGTCCTTAATGCTTGTGTCAAGGGGAAGCAATGGGAAGGAGCCTTTTGGGTTTTACAGCAGTTAAAGAAGGAAGGCCAACAACCCTCTGCTACAACTTATGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTACAAGTTGGTTCATGAATTTTTCAGAAAACTTCAAAAGTCTTATATTCCCAATTCATTGACATATAGAGTTCTCGTCAACACACTTTGGAAAGAGGGAAAAACTGATCAGGCTGTATTGACTGTGCAAGAAATGGAAAATCGTGGAATTGTAGGTTCTGCTTCTATTTATTATGACCTAGCTCGATGCCTTTGTTCTGCTGGAAGAATTCATGAGGGACTGATGCAGATAGACAAGATATGCAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCATGTCTAGACTGTGGAAACATTCAAGATGGGGCGTTTATTTTTGAGAAAATGAAGGAAATTTGTGCTCCGAATCTGGTTACTTTTAACATATTGCTGAAAGGTTACCTGGACCATGGGATGTTTCAAGAAGCTAAAGAGTTGTTTGAGAAGATGTTAGAAAACAAAAATCATCGGAGGGAAAATACTGATTACAAAATGCTGGTAACGCCAGATATTTACACATTCAACACCATGTTGGATGCGTGTGTTGCAGAGAAGAGATGGGATCATTTTGATGATATCTATCTAAGAATGTTCCAGCATGGTTACCACTTCAATGCAAAACGTCATCTTCGAATGGTACTGGAGGCTTCAAGAGCTGGAAAGATAGGGCCTTTGGAGATAACATGGAAGTACTTAGCCAATACCGGTCGCGTTCCGCCACCTCCTCTGGTGAAGGAGATGTTATGTCTGAAGCTTGAAAAGGATGACTATGTTTCTGCCCTCACATGTATCACCAATAATTCCCCAAAAGACTTGCAGCCATTTTCCAAATCATCATGGTTGAATCTATTCAAAGATAATTCTCAACGGTTTCAGAAGGATAGGCTTGTTAGACTAATGAATGAGGCTAGCAGTGTAGTTTCCAATAGTAGCACACCAAACCCAATTCTAGTGTATCTAATGCAATCATGCAAAGAGTTTTTATGTGCTAGTGACCTTAGTGTAGCTGATAAGGATTCAGCTGGAACCGTATTTGCAGTAGAAAATAATCTTGCAGCATGCTTAAGATGA 2718 0.4036 MGLLSFDINAISPSTFHYASISSFSSYAIPISPIPFSGNVLNTRVLTKFHLFYSPNLKFVLPLSASSLNDASNVGLVSDAINPKDLEFKPSFDEYLKAMESRTSRKKKRASTTDTTSQKQNVREKGEEGDKKVERVGEKIDGKEEFEAAKEDGKTIAMYKEERSSTSDVTVRQRNTKGFKNEHGRKESQIDVKGKQKREANVREDVWSKQKSHDSLEPESDGKSGSGSGRISNSITRPNSNYSLGEKVVSNRQRDYNTHGKGSGGNKTVVRNKVMDTGAGRRNTEIESVVNRSVPENVKLNRNSKRFIDRGYDSDNVEVERAAFTNLEVINRIQFSHKELEERIQKLARLLNGTDIDLPEWLFSKAIRSAKIKFNDYSITRVIILLGNLGNWQRVIQVIEWLQRRERFKSNKLRHIYTAALDVLRKSRRPVEALNMFNAMLQQMATYPDLVAYRSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGPFEKWDPRLEPDSVVYDAVLNACVKGKQWEGAFWVLQQLKKEGQQPSATTYGLVMEVMFSCGKYKLVHEFFRKLQKSYIPNSLTYRVLVNTLWKEGKTDQAVLTVQEMENRGIVGSASIYYDLARCLCSAGRIHEGLMQIDKICKVANKPLVVTYTGLMQACLDCGNIQDGAFIFEKMKEICAPNLVTFNILLKGYLDHGMFQEAKELFEKMLENKNHRRENTDYKMLVTPDIYTFNTMLDACVAEKRWDHFDDIYLRMFQHGYHFNAKRHLRMVLEASRAGKIGPLEITWKYLANTGRVPPPPLVKEMLCLKLEKDDYVSALTCITNNSPKDLQPFSKSSWLNLFKDNSQRFQKDRLVRLMNEASSVVSNSSTPNPILVYLMQSCKEFLCASDLSVADKDSAGTVFAVENNLAACLR* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1917 905 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Lan8g1917 905 Coils Coil 330 357 - -
Lan8g1917 905 SUPERFAMILY HCP-like 511 714 - -
Lan8g1917 905 Gene3D Tetratricopeptide repeat domain 615 780 IPR011990 GO:0005515
Lan8g1917 905 MobiDBLite consensus disorder prediction 175 220 - -
Lan8g1917 905 Pfam PPR repeat 721 750 IPR002885 -
Lan8g1917 905 Pfam PPR repeat 571 600 IPR002885 -
Lan8g1917 905 Pfam PPR repeat 416 442 IPR002885 -
Lan8g1917 905 MobiDBLite consensus disorder prediction 120 168 - -
Lan8g1917 905 MobiDBLite consensus disorder prediction 100 244 - -
Lan8g1917 905 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 672 702 IPR002885 -
Lan8g1917 905 MobiDBLite consensus disorder prediction 221 244 - -
Lan8g1917 905 PANTHER OS01G0674700 PROTEIN 69 882 IPR044645 GO:0009658
Lan8g1917 905 PANTHER OS01G0674700 PROTEIN 69 882 - -
Lan8g1917 905 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 719 753 IPR002885 -
Lan8g1917 905 TIGRFAM PPR: pentatricopeptide repeat domain 721 752 IPR002885 -
Lan8g1917 905 TIGRFAM PPR: pentatricopeptide repeat domain 674 703 IPR002885 -
Lan8g1917 905 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Lan8g1917 905 Gene3D Tetratricopeptide repeat domain 337 485 IPR011990 GO:0005515
Lan8g1917 905 Gene3D Tetratricopeptide repeat domain 489 589 IPR011990 GO:0005515
Lan8g1917 905 Pfam Pentatricopeptide repeat domain 638 683 IPR002885 -
Lan8g1917 905 Pfam Pentatricopeptide repeat domain 496 545 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1917 Lan-Chr8 25267921 25274489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1917 519 771 Glycosyltransferase AT1G05670 19.784 2.43e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1917 - - aprc:113864568 1168.3