Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1901 ATGACGGAGGAGAATCCAAAACTGACAAAGCTTCCGATAGAAGGAAAGCGCAACATCCTCATCACCAGCGCTTTGCCTTACGTCAATAACGTTCCTCATCTCGGCAACATCATTGGATGTGTGTTGAGTGCTGATGTATTTGCTCGATATTGTCGTCTTCGCGGTTACAACGCTATTTATATTTGCGGTACCGATGAGTATGGAACTGCAACTGAGACTAAAGCGTTGGAAGAGAATTGCTCTCCTAAACAGATTTGTGACAAATATCACGCTATTCATAAGGAGGTCTACAATTGGTTCAATATCAGTTTTGATGAATTTGGCCGCACGTCATCCCCTCAGCAAACTGAAGTCTGTCAAGCAATTTTTAAAAGACTATATGATAACAAGTGGCTTTCCGAGAACACAATGCAGCAGCTTTACTGTGATACTTGCGAAAAGTTCTTAGCCGATCGACTTGTGGAGGGTGATTGCCCAACTCCAGGATGTGAGTATGACTCCGCCCGAGGAGACCAGTGTGAAAAATGTGGAAAACTACTAAATCCTACTGAGTTGAAAAATCCTAGGTGCAAGGTTTGTCGAAAAAGTCCACGTATTCGTGATACAGACCACTTGTTTCTTGAACTCCCCCTATTGAAAGATAGATTGGAAAAATACATCAATGAGATGTCAGTGGTGGGATTATGGAGTCAGAATGCCATCCAAACAACGAATTCATGGTTAAGAGAAGGGTTGAAACAACGCTGCATTACTAGAGATTTAAAGTGGGGGGTTCCTGTCCCCCATGAAAAATATAGTGACAAGGTTTTCTATGTTTGGTTTGATGCTCCGATTGGTTATGTTTCGATCACTTCATGCTACACACCTGAATGGGAGAAATGGTGGAAAAACCCGGAGAATGTGGAGTTGTATCAGTTTATGGGCAAGGACAATGTGCCATTCCACACTGTCATGTTCCCATCTACTTTACTTGGAACTCATGAAAACTGGACTTTGATGAAGACTATTAGTGTTACCGAATACTTGAATTATGAAGCAGGGAAGTTTTCTAAAAGCAAAGGCGTCGGAGTATTTGGTAATGATGCAAAAGACACTGGTATTCCAGTTGAAGTATGGAGATATTACTTGCTCACAAATAGGCCCGAGGTATCTGATACGTTATTTACTTGGTCTGACTTGCAAGCAAAATTAAATAGTGAGCTGCTGAATAATCTGGGCAACTTCATCAACCGAGTTTTAAGTTTTATTGCCAAACCTGCAGGTCAAGGATATGATTCCATTATTCCTGCTATTCCTGATGATGTAAGTGATGACTCTCACGAACTGACCAAAAAATTGGCAAATGAAGTTTCTGCAAATCTGGAGCAATACATAGATGCAATGGAGAAGGTTAAACTAAAACAAGGATTGAAAATTGCAATGAGCATATCCAGTGAGGGCAATAGATATCTGCAGGAAGCTGAATTTTGGCACCTTTACAAAGACAACAAATCTCTATGCTCCCTTGTAATGAAAACTGCAGTTGGGATTGTGTATCTTCTCGCATGTTTATTGGAACCTTTTATTCCATCTTTCACTCTTGAGGTATTTAAGCAGCTTAATTTGTCCCCGGAGACACATCTTTCACTTTGTGATGAAAAGGGAGATATTGATAGGGTGAAAAGACCTTGGGATATCATAAGTGCTGGTCATAAAATTGGGAAACCCCAGCCATTGTTCAGAGAACTGAAAGATGAAGAAGTGGAGTTCTACAGGGAGAAATTTGCAGGAAGCCAAGCTGATAGGATTGTGCGTGCAGAGGCTGAAAAGGTTGCTGAGCAACTGAAGAAAACAAAAGTCTCAGACGGAAGTGGAAAGAAAAAATCATCAGCTAAGTCATCGAAAGAAGCCAAAAATAAGGCAGTTGCTGAACCTGATATTTCCATCACGAGGCTTGATATTCGTGTTGGCCTTATAAAAAAAGCTGAAAAACATCCTGCTGCAGATACTCTATATGTTGAGGAGATAGATGTTGGTGAAGAACAGCCCAGAACGGTCGTGAGTGGGCTTGTGAACTACATACCACTTGATGAAATGCAGAACCGTAAGGTCTGTGTTCTTTGTAACCTAAAACCAGTGACCATGAGGGGAATTAAATCTCACGCAATGGTGCTTGCTGCTTCGAATGACTCAAAGGTTGAATTGGTTGAGCCACCCACTGATGCTCGCGTCGGAGAAAGAGTTACATTCCCAGGGTATGAAGGTAATCCTGATGAAATCTTAAACCCAAAGAAGAAAGTTTGGGAAACATTGCAAGTAGACCTGCACAGTAATGATGAACTAGTGGCATGCTACAAAGATGTTCCACTCACCACATCAGCTGGCATTTGCAAGGTTTCATCCATACCTGGTGGATCCATTAAGTAA 2406 0.4144 MTEENPKLTKLPIEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCSPKQICDKYHAIHKEVYNWFNISFDEFGRTSSPQQTEVCQAIFKRLYDNKWLSENTMQQLYCDTCEKFLADRLVEGDCPTPGCEYDSARGDQCEKCGKLLNPTELKNPRCKVCRKSPRIRDTDHLFLELPLLKDRLEKYINEMSVVGLWSQNAIQTTNSWLREGLKQRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITSCYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTHENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTGIPVEVWRYYLLTNRPEVSDTLFTWSDLQAKLNSELLNNLGNFINRVLSFIAKPAGQGYDSIIPAIPDDVSDDSHELTKKLANEVSANLEQYIDAMEKVKLKQGLKIAMSISSEGNRYLQEAEFWHLYKDNKSLCSLVMKTAVGIVYLLACLLEPFIPSFTLEVFKQLNLSPETHLSLCDEKGDIDRVKRPWDIISAGHKIGKPQPLFRELKDEEVEFYREKFAGSQADRIVRAEAEKVAEQLKKTKVSDGSGKKKSSAKSSKEAKNKAVAEPDISITRLDIRVGLIKKAEKHPAADTLYVEEIDVGEEQPRTVVSGLVNYIPLDEMQNRKVCVLCNLKPVTMRGIKSHAMVLAASNDSKVELVEPPTDARVGERVTFPGYEGNPDEILNPKKKVWETLQVDLHSNDELVACYKDVPLTTSAGICKVSSIPGGSIK* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1901 801 Gene3D - 640 801 IPR012340 -
Lan8g1901 801 Coils Coil 447 467 - -
Lan8g1901 801 Pfam Putative tRNA binding domain 647 739 IPR002547 GO:0000049
Lan8g1901 801 Pfam tRNA synthetases class I (M) 19 413 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan8g1901 801 Hamap Methionine--tRNA ligase [metG]. 17 587 IPR023458 GO:0004825
Lan8g1901 801 PANTHER METHIONINE--TRNA LIGASE 8 800 IPR023458 GO:0004825
Lan8g1901 801 CDD tRNA_bind_EMAP-II_like 640 742 - -
Lan8g1901 801 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 26 37 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan8g1901 801 ProSiteProfiles tRNA-binding domain profile. 641 742 IPR002547 GO:0000049
Lan8g1901 801 CDD Anticodon_Ia_Met 397 533 IPR041872 -
Lan8g1901 801 Gene3D - 402 575 - -
Lan8g1901 801 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 154 190 IPR029038 -
Lan8g1901 801 CDD MetRS_core 18 388 IPR033911 GO:0004825|GO:0006431
Lan8g1901 801 Gene3D - 154 190 IPR029038 -
Lan8g1901 801 TIGRFAM metG: methionine--tRNA ligase 19 539 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Lan8g1901 801 Pfam Anticodon binding domain of methionyl tRNA ligase 441 592 IPR041872 -
Lan8g1901 801 SUPERFAMILY Nucleic acid-binding proteins 641 799 IPR012340 -
Lan8g1901 801 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 8 800 - -
Lan8g1901 801 PRINTS Methionyl-tRNA synthetase signature 21 34 IPR033911 GO:0004825|GO:0006431
Lan8g1901 801 PRINTS Methionyl-tRNA synthetase signature 54 68 IPR033911 GO:0004825|GO:0006431
Lan8g1901 801 PRINTS Methionyl-tRNA synthetase signature 102 113 IPR033911 GO:0004825|GO:0006431
Lan8g1901 801 PRINTS Methionyl-tRNA synthetase signature 270 281 IPR033911 GO:0004825|GO:0006431
Lan8g1901 801 PRINTS Methionyl-tRNA synthetase signature 305 320 IPR033911 GO:0004825|GO:0006431
Lan8g1901 801 PRINTS Methionyl-tRNA synthetase signature 400 411 IPR033911 GO:0004825|GO:0006431
Lan8g1901 801 Gene3D HUPs 18 401 IPR014729 -
Lan8g1901 801 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 405 589 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan8g1901 801 SUPERFAMILY Nucleotidylyl transferase 16 400 - -
Lan8g1901 801 MobiDBLite consensus disorder prediction 608 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1901 Lan-Chr8 25170498 25178521 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1901 K01874 - gmx:100809861 1430.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1901 8 25170498 25178521 Lan13g0096 13 562597 568588 LSH