Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1882 ATGGCTAACATTACCAATGATGAAATTGCTCAACCCAACATTGCTCCTTTAAAGCAGCCTCTCCCTACTCTAAAAACTGTTGATTCTCAATCTGTTCTCAGAAGATTGCAATCAGAATTAATGGCCTTGATGATGAGTGGAGATTCTGGTATATCAGCATTTCCTGAAGAGGACAATATATTCTCATGGAAAGGAACAATAACAGGAAGCAAAGATACTGTTTTTGAAGAAACAGATTACAAATTATCTCTTTCTTTTCCCAATGATTACCCTTTTAAGTCTCCTAAAGTCAAGTTTGAAACAACATGCTTCCATCCTAATGTAGATGTTCATGGCAATATATGTTTGGACATACTTCAGGATAAATGGTCTTCTGCTTATGATGTCAGAACAATTCTTCTATCTATCCAAAGTCTTCTAGGAGAGCCAAATATTAGTTCACCTCTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGAAAGGTGGTGGAGAAGTTGTACAAATCTGCTAGTGCTTAG 531 0.3691 MANITNDEIAQPNIAPLKQPLPTLKTVDSQSVLRRLQSELMALMMSGDSGISAFPEEDNIFSWKGTITGSKDTVFEETDYKLSLSFPNDYPFKSPKVKFETTCFHPNVDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEEYRKVVEKLYKSASA* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1882 176 PANTHER BNAC06G03670D PROTEIN 16 174 - -
Lan8g1882 176 CDD UBCc 34 171 IPR000608 -
Lan8g1882 176 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 31 176 IPR000608 -
Lan8g1882 176 Pfam Ubiquitin-conjugating enzyme 35 169 IPR000608 -
Lan8g1882 176 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 16 174 - -
Lan8g1882 176 SUPERFAMILY UBC-like 29 171 IPR016135 -
Lan8g1882 176 SMART ubc_7 34 176 - -
Lan8g1882 176 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 104 119 IPR023313 -
Lan8g1882 176 Gene3D Ubiquitin Conjugating Enzyme 25 175 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1882 Lan-Chr8 25079169 25080617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1882 33 140 Miscellaneous Gene Families AT3G17000 30.973 3.43e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1882 K06688 - gmx:100305664 305.449