Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1830 ATGGGTTTCTTCACCACTATATTGGGTTTTTTTGGATTCGGATTTGGGATTTCAATTGGTCTTATAGTTGGTTATTTTTTCTTCATTTACTTTCAACCCACGCATGTTAAGGATCCTGAAATCAAGCCCTTGGTGGAGCATGACCCAGTAACCTTGCAAAAAATGCTTCATGAGATCCCTATTTGGATTAAAAATCCTGACTTTGATAGGGTTGACTGGCTTAACAAGTTTATAGAATATATGTGGCCTTACCTTGATAAGGCAATTTGCAAGACTGCCAAGAACATTGCTAAGCCCATAATTGCTGAGCAGATTCCGAAGTATAAAATTGACGGCGTTGAGTTTGAAACATTCACACTGGGCTCCCTGCCCCCAACTTTTCAAGGAATGAAAGTTTATGTCACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCAAATGTCACTTTATCTGTTAAGGCATTTGGGCTGAAAGCAACCGTTCAGGTTCTGGATTTGCAAGTTTTTCTTGTTCCTCGCATTACTTTGAAGCCTTTGGTTCCAAGCTTTCCTTGCTTTGCCAACATCTATGTCTCCCTCATGGAAAAGCCACATGTTGATTTTGGGCTAAAGGTTGTAGGGGCCGATCTTATGTCTATTCCTGGTGTCTACAGTTTTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACATGTATTTATGGCCCAAAACCTTGGAAGTTCAAATAATAGATCCAACAAAAGCCATGAAGAGGCCTGTTGGAATTTTACACGTGAAGGTTCTGAGAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGTTAAAGATGACTGATGATAAGATGCCATCGGAAAAGACTACTGTCAAGTACAAGAGCTTAAATCCTGAATGGAATGAAGAATTTAATTTGTCTGTTAAAGATATCGAATCCCAAGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGGGTATGAATGTGATCCCGTTAAAAGCGATTCCCCCTGAAGAGCCTAAAGAATTTACTCTTGGCCTCCTAAAAAATATGGATCCTAATGATGTCCATAATGTGAAATCACATGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAAGATGAGTTGGCAAAGGGTTTTGAAGAGAAACACACAGTACAAAAAGCTCCCGAAGGTACTCCTGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTGAAGAAGTTGAAGGGAAGTACCACACTAATCCATATGTTCGGGTTACTTTGACCGGGCAGCAGAAGAAGACTAAGCGCATTAAAAGGAACAGAGATCCAAGATGGGAAGAAGAATTCGGATTTACGTTGGAGGAGCCTCCCACTAACCAAAGATTGCATGTGGAGGTTATCAGCACTTCATCGAGAAAACTGATCCATCAAAAGGAATCATTGGGATATGTCGATATAAGTTTAGCCGATGTTGTTTCTAACAAGAGAATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCATCCAGATAGAGTTGCAGTGGAGAACTTCATAA 1614 0.4021 MGFFTTILGFFGFGFGISIGLIVGYFFFIYFQPTHVKDPEIKPLVEHDPVTLQKMLHEIPIWIKNPDFDRVDWLNKFIEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDGVEFETFTLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNVTLSVKAFGLKATVQVLDLQVFLVPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKVVGADLMSIPGVYSFVQELIKDQVANMYLWPKTLEVQIIDPTKAMKRPVGILHVKVLRAMKLKKKDLLGASDPYVKLKMTDDKMPSEKTTVKYKSLNPEWNEEFNLSVKDIESQVLEINVYDWEQVGKHDKMGMNVIPLKAIPPEEPKEFTLGLLKNMDPNDVHNVKSHGQIVVELTYKPFKEDELAKGFEEKHTVQKAPEGTPAGGGLLVVIVHEAEEVEGKYHTNPYVRVTLTGQQKKTKRIKRNRDPRWEEEFGFTLEEPPTNQRLHVEVISTSSRKLIHQKESLGYVDISLADVVSNKRINEKYHLIDSKNGRIQIELQWRTS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1830 537 ProSiteProfiles C2 domain profile. 402 518 IPR000008 -
Lan8g1830 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 369 IPR035892 -
Lan8g1830 537 CDD C2 262 359 - -
Lan8g1830 537 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Lan8g1830 537 SMART C2_3c 419 517 IPR000008 -
Lan8g1830 537 SMART C2_3c 261 361 IPR000008 -
Lan8g1830 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Lan8g1830 537 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Lan8g1830 537 Gene3D C2 domain 255 412 IPR035892 -
Lan8g1830 537 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Lan8g1830 537 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 536 IPR045050 GO:0008289
Lan8g1830 537 Pfam C2 domain 419 520 IPR000008 -
Lan8g1830 537 Pfam C2 domain 260 359 IPR000008 -
Lan8g1830 537 Gene3D C2 domain 419 536 IPR035892 -
Lan8g1830 537 PRINTS C2 domain signature 277 289 IPR000008 -
Lan8g1830 537 PRINTS C2 domain signature 304 317 IPR000008 -
Lan8g1830 537 PRINTS C2 domain signature 326 334 IPR000008 -
Lan8g1830 537 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1830 Lan-Chr8 24724971 24730682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1830 258 516 Lipid Metabolism Gene Families AT3G61300 27.174 7.78e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1830 - - gmx:100781189 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0112 7 637605 645401 Lan8g1830 8 24724971 24730682 LSH