Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1800 ATGGCCAGTGATTCTTTTGTAATCTCTAATGGCAATGGTAATGGCAATGTCAACCCGCAGCCTATTCCGCAGAGAACTTATCAGGTAGTAATGATTGCAACTCGAGATATGGGTATTTCTAAGGATGGAAAATTACCCTGGACATTACCCACTGATGCCAAATTTTTTGACGAGATCACGACCAAAACATCTGACCCCGGGAAAAAGAATGCCGTTGTAATGGGCAGAAAATCATGGGAGGGTATCCCTCCTGAGAACAGACCACTTCCCGGTCGCCTCAATGTTGTTCTGACTCGCTCCGGTAGTTTTGATATTGCAACAGCAGAGAACGTTGTTATTTGTGGAAGTGTGTCCTCAGCTTTGGAACTGTTGGCTTCTTCTCCATACTGTCTGTCAATTGAGAAAGTATTTATTACAGGAGGTGGTGAGATTTTGAGAGAGACTCTTAATGCACCTGGATGTGAAGCTGCCCACATTACTGAAATTGAAGCAAGCATTGAGTGTGACACTTTTATGCCTCAAATTGATACCTCTATATTTCAGCTATGGTACTCGTCATTCCCTTTGGTGGAAAACAACATCCGATATTCTTTCAACACCTACGTGCGTGTGAGGAGTTGTCCAATAGAGTCCTTGAGTCAGAATAGTGATCCAATTTTTTATAATAATTCGAACACTAAGAAATTTGAGGTCCACAAATTTTCTTTTCTTCCTAAAATGATTTTTGATAGACATGAGGAGTACAAATATCTTGGATTGGTTCAAGAAATCATTTCTGAAGGTAATACTAAGGATGATAGAACAGGAACCGGTACCTTGTCTAAGTTTGGATGCCAGATGAGGTTCAATCTGCGCAGAAGCTTTCCTCTTCTAACAACTAAGAAAGTATTTTGGCGCGGGGTTGTTGAAGAGCTTCTCTGGTTTATCAGTGGCTCTACGAGTGCCAAGGTACTGCAGGAAAAAGGCATTCATATCTGGGATGGCAATGCATCTAGAGAATACCTTGATAGTGTTGGCTTTAAAGACAGAGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCTAGGTATACTGACATGCATGATGACTACTCTGGTCAAGGAGTTGATCAACTTTTAGATGTTATCAACAAGATAAAGCACAATCCTGATGATCGACGGATCGTTATTTCATCGTGGAATCCAGCTGATCTTAAATTGATGGCACTTCCACCTTGTCACATGTTTGCTCAGTTCTATGTAGCAAATGGGGAGTTATCCTGCCAAATGTATCAACGATCTGCTGACATGGGCCTGGGTGTGCCGTTTAACATTGCATCTTATGCGCTGCTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACAGCAATCATGTTAGACCTTTGCAGGAACAGCTCCAAAACCTTCCAAAGCCTTTTCCGATTTTGAAGATAAATCCAAAAAAGAAGGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAAATAGAAATGAAGATGGCTGTTTAG 1593 0.4162 MASDSFVISNGNGNGNVNPQPIPQRTYQVVMIATRDMGISKDGKLPWTLPTDAKFFDEITTKTSDPGKKNAVVMGRKSWEGIPPENRPLPGRLNVVLTRSGSFDIATAENVVICGSVSSALELLASSPYCLSIEKVFITGGGEILRETLNAPGCEAAHITEIEASIECDTFMPQIDTSIFQLWYSSFPLVENNIRYSFNTYVRVRSCPIESLSQNSDPIFYNNSNTKKFEVHKFSFLPKMIFDRHEEYKYLGLVQEIISEGNTKDDRTGTGTLSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNASREYLDSVGFKDREEGDLGPVYGFQWRHFGARYTDMHDDYSGQGVDQLLDVINKIKHNPDDRRIVISSWNPADLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYSNHVRPLQEQLQNLPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1800 530 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 239 530 IPR036926 -
Lan8g1800 530 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 225 530 IPR036926 -
Lan8g1800 530 Gene3D Dihydrofolate Reductase, subunit A 12 205 IPR024072 -
Lan8g1800 530 SUPERFAMILY Dihydrofolate reductase-like 27 203 IPR024072 -
Lan8g1800 530 PRINTS Thymidylate synthase family signature 288 309 IPR000398 GO:0004799|GO:0006231
Lan8g1800 530 PRINTS Thymidylate synthase family signature 381 400 IPR000398 GO:0004799|GO:0006231
Lan8g1800 530 PRINTS Thymidylate synthase family signature 407 422 IPR000398 GO:0004799|GO:0006231
Lan8g1800 530 PRINTS Thymidylate synthase family signature 425 451 IPR000398 GO:0004799|GO:0006231
Lan8g1800 530 PRINTS Thymidylate synthase family signature 463 480 IPR000398 GO:0004799|GO:0006231
Lan8g1800 530 Pfam Dihydrofolate reductase 29 203 IPR001796 GO:0004146|GO:0046654
Lan8g1800 530 Hamap Thymidylate synthase [thyA]. 247 530 IPR000398 GO:0004799|GO:0006231
Lan8g1800 530 PANTHER THYMIDYLATE SYNTHASE 1 1 530 IPR045097 GO:0016741
Lan8g1800 530 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 26 203 IPR001796 GO:0004146|GO:0046654
Lan8g1800 530 PIRSF DHFR-TS 9 530 IPR012262 GO:0004146|GO:0004799|GO:0006730
Lan8g1800 530 Pfam Thymidylate synthase 249 530 IPR023451 -
Lan8g1800 530 ProSitePatterns Thymidylate synthase active site. 392 420 IPR020940 GO:0004799|GO:0006231
Lan8g1800 530 TIGRFAM thym_sym: thymidylate synthase 249 530 IPR000398 GO:0004799|GO:0006231
Lan8g1800 530 MobiDBLite consensus disorder prediction 1 22 - -
Lan8g1800 530 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 530 - -
Lan8g1800 530 CDD DHFR 29 202 IPR001796 GO:0004146|GO:0046654
Lan8g1800 530 CDD TS_Pyrimidine_HMase 250 483 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1800 Lan-Chr8 24538716 24543663 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1800 K13998 - gmx:100788658 962.214