Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1780 ATGAAAAACGAAAGAGTTGTTAGTGGCACCATGTTAGTAGAGCGAAACACATACCATAGACCGAAAGTAGGAGCTACCTTGCACTCCGATCCGACGTCGCTTTATTCCCCGGACCACAACGACGACGATGACTACTCCACCACCCGTCATAGCAACGTCTCCGCCGCAACACCTACCGGCAGCAGTAGCAATGCCTCCCCCTTAATGATGTCACCATGGAACCAAGTCCAAGACACTTCATCTCCTTACAACAAGTCACCATGGTTGTTAACCTCTTCCACGATCAACTTATTCAACCACCCTGAGGATGAAGACAACAATGACAATAGCAACCAATTAGAAAACGGCCTCATCGGATCGCTCGTTCGCGAAGAGGGTCACATATACTCATTGGCAGTTTCTGGGGGCTTGTTGTACACAGGCTCAGACAGCAAGAACATTAGGGTTTGGAAGGATATGAAGGATTACACCGGCTTCAAATCAAGCAGTGGATTGGTCAAAACCATAGTGATTTCCGGTGAGAAAATCTTCACAGGCCATCAAGATGGGAAAATCAGGGTTTGGAAGGGTTCACATAAGAACCCTAGCAGCTACAAACGCGTGGGAAGCTTGCCTAAATTCAAAGACTACGTGAAGAGCTCAATGAATCCGAAGAAGTACGTTGAAGTCAGGCCACACCGAAACGCAGTGAAGGTTAAGCACTTCGACGCCGTTTCGAGCTTGAGCTTGGACGAGGAAGAAGGGTTGTTATATTCTGGGTCATGGGATAAAACCCTCAAGGTTTGGCGCGTGTCAGATTCAAAGTGCGTAGAGTCCATCACAGCACACGATGATGCAGTTAACGCGGTGGTATCGGCGTTAAAGGGATACGTGTTCACCGGTTCAGCGGACGGCACGGTGAAGATGTGGAAGAGAGAACCAAGGGGGAAGAAAACGAAGCATGATTTGGATAGGGTTCTGTTAAAGCAAGAAAACGCTGTTACTTCTTTAGCAGTTAACCGTTCATCAACGGTTATTTATTGCGGTTCATCTGACGGGTTAGTTAACTACTGGGAGCGTGATGATAAGAACAACGGGCTTACTCACGGCGGCGTTCTGAAGGGTCATAAGCTGGCGGTGCTGTGCCTAGCGGCGGCGGGGGGGAGTCTTGTTTTCAGCGGCTCAGCCGATAAGAATGTTTGTGCTTGGAAGCGTGAGGATAATGGGTCCCACATTTGTCTTTCGGTTCTAACGGGCCATATGGGACCGGTTAAGTGCATTGCGGTTCATGAAGAACGGGAACGTTATCATGACAAGGGGGTTCAGCGTTGGACCGTTTACACTGGGAGTTTGGATAAATCAGTGAAGGTGTGGCGCGTGACTGAACACGCTCCTGAGTTGCATATGAGTAGTCCCACCTATGATTCCTCACCACCTGGATCAAAGCGTTCAAGTGATGGGAAGAGTATTACTACTGCTACTAGTAGCAGCTTCAATAGTAGAATGTCTGATCACGCGCCAAGTGAATCTTTTGATTCTTCGCCCACAACACAGATTAATTCTGTTAGAACCATTGGGAAGAGTAATCTTAATATGGGTAAGTTTGAACACGCGCCGAGTCATGGTGGCTTGTCATTTGATTCACCTGTGGCAGGAGTACTGAGTGGTTCTACGGCCTCAACAAATACAATAAGTGTCAGCAATGAGAGCAATAATAATAATAATTGTTCTAATAACACTTGGCAAAATTTAAGTTCAAAGTTTGGAAAGGGAGAGGAAAATAGAACAGGTGGTGATTTTGATGCTACAAGTAGCAGTTACCTTAAAAGCAATGCCGACAACTACCAAAACTGGAGGTTCTAA 1842 0.468 MKNERVVSGTMLVERNTYHRPKVGATLHSDPTSLYSPDHNDDDDYSTTRHSNVSAATPTGSSSNASPLMMSPWNQVQDTSSPYNKSPWLLTSSTINLFNHPEDEDNNDNSNQLENGLIGSLVREEGHIYSLAVSGGLLYTGSDSKNIRVWKDMKDYTGFKSSSGLVKTIVISGEKIFTGHQDGKIRVWKGSHKNPSSYKRVGSLPKFKDYVKSSMNPKKYVEVRPHRNAVKVKHFDAVSSLSLDEEEGLLYSGSWDKTLKVWRVSDSKCVESITAHDDAVNAVVSALKGYVFTGSADGTVKMWKREPRGKKTKHDLDRVLLKQENAVTSLAVNRSSTVIYCGSSDGLVNYWERDDKNNGLTHGGVLKGHKLAVLCLAAAGGSLVFSGSADKNVCAWKREDNGSHICLSVLTGHMGPVKCIAVHEERERYHDKGVQRWTVYTGSLDKSVKVWRVTEHAPELHMSSPTYDSSPPGSKRSSDGKSITTATSSSFNSRMSDHAPSESFDSSPTTQINSVRTIGKSNLNMGKFEHAPSHGGLSFDSPVAGVLSGSTASTNTISVSNESNNNNNCSNNTWQNLSSKFGKGEENRTGGDFDATSSSYLKSNADNYQNWRF* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1780 613 SUPERFAMILY WD40 repeat-like 118 463 IPR036322 GO:0005515
Lan8g1780 613 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 14 463 - -
Lan8g1780 613 Gene3D - 86 218 IPR015943 GO:0005515
Lan8g1780 613 Gene3D - 223 310 IPR015943 GO:0005515
Lan8g1780 613 MobiDBLite consensus disorder prediction 463 512 - -
Lan8g1780 613 Gene3D - 311 491 IPR015943 GO:0005515
Lan8g1780 613 Pfam WD domain, G-beta repeat 406 451 IPR001680 GO:0005515
Lan8g1780 613 Pfam WD domain, G-beta repeat 234 262 IPR001680 GO:0005515
Lan8g1780 613 Pfam WD domain, G-beta repeat 268 304 IPR001680 GO:0005515
Lan8g1780 613 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 268 - -
Lan8g1780 613 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Lan8g1780 613 PRINTS G protein beta WD-40 repeat signature 291 305 IPR020472 -
Lan8g1780 613 PRINTS G protein beta WD-40 repeat signature 439 453 IPR020472 -
Lan8g1780 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 352 IPR001680 GO:0005515
Lan8g1780 613 MobiDBLite consensus disorder prediction 22 79 - -
Lan8g1780 613 MobiDBLite consensus disorder prediction 461 512 - -
Lan8g1780 613 CDD WD40 125 452 - -
Lan8g1780 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 304 IPR001680 GO:0005515
Lan8g1780 613 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 14 463 IPR045182 -
Lan8g1780 613 MobiDBLite consensus disorder prediction 49 79 - -
Lan8g1780 613 SMART WD40_4 266 304 IPR001680 GO:0005515
Lan8g1780 613 SMART WD40_4 114 151 IPR001680 GO:0005515
Lan8g1780 613 SMART WD40_4 403 452 IPR001680 GO:0005515
Lan8g1780 613 SMART WD40_4 152 189 IPR001680 GO:0005515
Lan8g1780 613 SMART WD40_4 225 263 IPR001680 GO:0005515
Lan8g1780 613 SMART WD40_4 313 352 IPR001680 GO:0005515
Lan8g1780 613 SMART WD40_4 359 397 IPR001680 GO:0005515
Lan8g1780 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 272 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1780 Lan-Chr8 24420148 24423206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1780 138 470 Acyl Lipid Metabolism Gene Families AT3G18860 26.316 8.36e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1780 - - lang:109355444 1213.75