Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1769 ATGGGTAATTATAGTATTATCAAGTTTTGTCTTAACTTGTCCTTTTTCCTTCTAATTTCCCTCTCTCATTCCTTTTCCTTTGCTGAGGTTTTCTTTGAAGAGAAATTTCAAGATGGATGGAAAAGCCGTTGGGTTTTGTCTGATTGGAAAAGGAGTGAAGGAAAAGCTGGCACCTTTAAGTACACTGCAGGAAAATGGCATGGAGATCCTGATGATAAAGGTATTCAGACATATAATGATGCTAAGCATTATGCCATATCTGCTAAGATACCAGAGTTAAGCAATAAGAATAGAACTCTTGTGGTTCAGTATTCAATTAAATTTGAGCAGGACATTGAATGTGGTGGTGGTTACATTAAACTCCTTTCTGGTTATGTTAATCAGAAGAAGTTTGGTGGTGATACTCCTTATAGTTTGATGTTCGGACCAGATTTATGTGGTTCACAGACCAAGAAGCTCCATGTTATACTATCATACCAGGGGCAGAATTATCCTATTAGGAAGGACTTACAATGCGAAACAGACAAATTGACTCATTTCTATACATTTATTCTAAGGCCCGATGCCTCTTATAGTGTCCTTGTTGATAACCGAGAAAGAGATTCTGGAAGTATGTACACAGATTGGGACATCCTTCCTCCACGGAAAATCAAGGACATCAAGGCAAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAAGACCCCAATGATGACAAGCCAGAGGGATATGATTCAGTTCCATCTGAAATTCCTGATCCAAAAGCAAATGAGCCTGTGGACTGGGATGAAGAAGAAGATGGACTATGGAAGCCCCCCAAAATTCCTAATCCAGCATACAAAGGACCATGGAAGCACAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGATTCCCTGGATTGATAACCCAGAATTTGAAGATGATCCTGATCTTTATGTGCTGAAACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAAGCTGGTTCAATTTTCGACAATATCTTAATTTGTGATGACCCACAGTATGCAAGGGAAGTTGTGGAAGGATTTATGGCTGATAACAGAGAGCCAGAAAAGGACGCTTTTGAAGAAGCAGAAAAAGTAAGAAAGGCTAAAGAAGAAGAGGAAGCACAAAGAGCTAGAGAAGAGGGCGAAAAGAGAAGGAGGGAGAGGGGTCATAAGCATGGAGATAGGAGGCGCCGTAGTAGGGATGAACTTTGA 1239 0.4052 MGNYSIIKFCLNLSFFLLISLSHSFSFAEVFFEEKFQDGWKSRWVLSDWKRSEGKAGTFKYTAGKWHGDPDDKGIQTYNDAKHYAISAKIPELSNKNRTLVVQYSIKFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDLCGSQTKKLHVILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDIKAKKPADWDDREYIEDPNDDKPEGYDSVPSEIPDPKANEPVDWDEEEDGLWKPPKIPNPAYKGPWKHKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIFDNILICDDPQYAREVVEGFMADNREPEKDAFEEAEKVRKAKEEEEAQRAREEGEKRRRERGHKHGDRRRRSRDEL* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1769 412 Pfam Calreticulin family 269 342 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lan8g1769 412 Pfam Calreticulin family 32 268 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lan8g1769 412 MobiDBLite consensus disorder prediction 359 396 - -
Lan8g1769 412 Gene3D - 29 385 - -
Lan8g1769 412 Gene3D Calreticulin/calnexin, P domain 214 315 IPR009033 GO:0005509|GO:0005515
Lan8g1769 412 PIRSF Calreticulin 8 412 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lan8g1769 412 ProSitePatterns Calreticulin family signature 1. 107 122 IPR018124 GO:0005509
Lan8g1769 412 Coils Coil 364 396 - -
Lan8g1769 412 ProSitePatterns Calreticulin family signature 2. 139 147 IPR018124 GO:0005509
Lan8g1769 412 MobiDBLite consensus disorder prediction 359 412 - -
Lan8g1769 412 PANTHER CALRETICULIN AND CALNEXIN 14 403 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lan8g1769 412 MobiDBLite consensus disorder prediction 228 247 - -
Lan8g1769 412 PRINTS Calreticulin signature 109 127 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lan8g1769 412 PRINTS Calreticulin signature 135 151 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lan8g1769 412 PRINTS Calreticulin signature 224 237 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lan8g1769 412 PRINTS Calreticulin signature 252 274 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lan8g1769 412 PRINTS Calreticulin signature 290 309 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lan8g1769 412 PRINTS Calreticulin signature 323 343 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lan8g1769 412 MobiDBLite consensus disorder prediction 228 276 - -
Lan8g1769 412 PANTHER CALRETICULIN-3 14 403 - -
Lan8g1769 412 SUPERFAMILY P-domain of calnexin/calreticulin 210 325 IPR009033 GO:0005509|GO:0005515
Lan8g1769 412 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 227 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1769 Lan-Chr8 24344545 24350050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1769 13 349 Miscellaneous Gene Families AT5G61790 34.937 1.28e-62 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1769 K08057 - gmx:100802428 678.322