Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1683 ATGCAATCTTTTGGTATAAATTGCTTCAAATATCGCAGCTACTTCACAAGGGATATCTTGAATCAAAATCCATGCTCTATAAACTCATTTTGTCCCAATTTTCCTGACCAAATTTATCAAAATTCACAAAAGATACGTTTTTTTCATCATACCCACAAAGCTAACCCCTTTTTGTTCCAAATCACTGTTAGTCATACTCAATTTCCTATTTTAATTGCACCCTTTCGTTTTAATCCCTATTGTTATTCAACTAAGGCTCCATCTAGGTCTTATAGAAGAAGAGTTAGTAATAGGTTATTGAAATCCCAAAAGCCTATTTTAGACCAAGCTCAGTTTCAGTTGGCAATTTCCCAAATTCTACCAAGGTTCACTCCTGAAGAACTCTGCAATGTGCTCACTCTTCAAAATGACCCTTTAGTTTGTTTGGAACTGTTTCACTGGGCTTCTCAGAAGCCCAGGTTTCGACACGATGTGTTGACTTATCATGTCACCATAAAGAAGCTTGGTGCTGCAAAAATGTACCAAGAAATGGATGACATTGTGAACCAAGTGCTTGCAGTTCCTTCTGTTGGTTCTGAGGCAATGTTTAATACCATCATTTATTATTTCACTGAGGCGCGGAAGTTGAGTAGAGCAGTTAGTATATTCAAGCACATGAAAAGTTGTACAAAATTGAATTGCAGGCCTTCTATTAGAACCTATCATATTATTTTTTCTGCACTTTTGAGTAGAGGTAACAATGCTGATATAAACTATGTGTATATGGAGACAATCAGAAGTCTGTTCCGGCAAATGGTTAATGATGGGATAGAACCCGATATATTTTTGTTAAATTTGATGATAAAAGGTTATGTGCTTTCTCTTCATGTTAATGATGCAATGAGGATATTCCATCAGATGAGCGGGGTTTATGATTGCCAGCCGAACTCTTTCACCTATGATTACTTGATTCATGGGTTGTGTGCCCAAGACAGAACAAATAATGCCAAAGAATTATGTCTTGAAATGAAGACCAAAGGCTTCATCCCAAGTGGTAAGTCTTATAATTCACTTGTCAGTGCTTTGGCACTTGGTGGAGAGGTTGAGGAGGCAGTAAATTATCTGTGGGAGATGACCGAGAAACAGAGGTCGGTTGATTTTATTACATATAGGACTGTACTAGATGAGATCTGTAGACGAGGAAGGGTTCAGGAGGCCATGCGGTTATTGCAGGAGTTACGAGAGAAAGGCCTTGTAGAAGGGCATGATTACAGAAAGCTTCATTATGTTCTTGAAGAAGACTATGGGAATTCGTTGAGTAGAATTGCTGCAGGTCCAGCCTTAACCTCACCTAGAAACTCTTCATAA 1347 0.3831 MQSFGINCFKYRSYFTRDILNQNPCSINSFCPNFPDQIYQNSQKIRFFHHTHKANPFLFQITVSHTQFPILIAPFRFNPYCYSTKAPSRSYRRRVSNRLLKSQKPILDQAQFQLAISQILPRFTPEELCNVLTLQNDPLVCLELFHWASQKPRFRHDVLTYHVTIKKLGAAKMYQEMDDIVNQVLAVPSVGSEAMFNTIIYYFTEARKLSRAVSIFKHMKSCTKLNCRPSIRTYHIIFSALLSRGNNADINYVYMETIRSLFRQMVNDGIEPDIFLLNLMIKGYVLSLHVNDAMRIFHQMSGVYDCQPNSFTYDYLIHGLCAQDRTNNAKELCLEMKTKGFIPSGKSYNSLVSALALGGEVEEAVNYLWEMTEKQRSVDFITYRTVLDEICRRGRVQEAMRLLQELREKGLVEGHDYRKLHYVLEEDYGNSLSRIAAGPALTSPRNSS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1683 448 Pfam Pentatricopeptide repeat domain 195 240 IPR002885 -
Lan8g1683 448 PANTHER ATPASE EXPRESSION PROTEIN 3 14 434 - -
Lan8g1683 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Lan8g1683 448 Pfam PPR repeat family 272 321 IPR002885 -
Lan8g1683 448 Pfam PPR repeat 379 406 IPR002885 -
Lan8g1683 448 TIGRFAM PPR: pentatricopeptide repeat domain 381 412 IPR002885 -
Lan8g1683 448 TIGRFAM PPR: pentatricopeptide repeat domain 195 221 IPR002885 -
Lan8g1683 448 TIGRFAM PPR: pentatricopeptide repeat domain 311 344 IPR002885 -
Lan8g1683 448 Pfam PPR repeat 347 374 IPR002885 -
Lan8g1683 448 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 14 434 - -
Lan8g1683 448 Gene3D Tetratricopeptide repeat domain 255 432 IPR011990 GO:0005515
Lan8g1683 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Lan8g1683 448 Gene3D Tetratricopeptide repeat domain 97 254 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1683 Lan-Chr8 23742731 23745714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1683 232 412 Glycosyltransferase AT1G05670 22.581 5.28e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1683 - - gmx:102666460 643.269