Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1653 ATGGCTTCAGCCAACGCTCTTTCCTCTGCTTCAATTCTTCGCTCTCCCAAACAACAGAGTTTGAGCAGAAAAGTGAACCAAAGTGGAAATGGAAGGGTTAATTATAGACAACAAAATAATCGATTCTGTGTAAAAGCTTCTGCTAAAGATATTGCGTTTGACCAGCGTTCTCGTGCAGCTCTTCAAGCTGGAATTGACAAACTTGCTGATGCTGTTGGTCTCACTCTTGGCCCAAGGGGGAGGAATGTTGTGTTGGATGAGTTTGGAAATCCGAGAGTTGTTAATGATGGAGTTACTATTGCCCGAGCAATTGAGCTACCTGATCCCATGGAAAATGCTGGTGCTGCTCTCATTAGGGAGGTTGCTAGCAAAACTAATGACTCTGCGGGGGATGGAACAACAACTGCTTCGGTTCTTGCTCGAGAAATAATTAAACTTGGACTTCTCAATGTGACCTCTGGTGCTAATCCTGTATCCATTAAGAAAGGAATTGATAAAACTGTACAGGGTTTGGTGGCGGAGCTCGAGAAGAAAGCCAGGCCTGTCAAAGGAGGAGATGATATCAAAGCTGTGGCTACTATTTCTGCTGGAAATGATGAGTTGATTGGAAAAATGATTGCTGATGCAATTGACAAGGTAGGACCGGATGGAGTGTTATCCATTGAATCATCCTCGTCTTTTGAGACTACAGTTGAAGTAGAAGAAGGAATGGAGATTGACAGAGGCTATATCTCCCCTCAATTTGTTACAAACCCCGAGAAGTCAATTGTTGAATTTGAGAATGCAAGAGTCTTGATAACAGATCAGAAGATTTCAGCAATAAAAGATATAATTCCTCTGTTGGAGAAAACCACTCAATTGAGAGCCCCCTTGCTGATCATTGCTGAAGATATCACTGGTGAGGCTTTGGCTACCCTTGTTGTGAATAAGCTGCGGGGTATTCTTAATGTTGCTGCCATCAAAGCTCCTGGATTTGGTGAGCGCCGAAAGGCCCTCCTTCAAGACATTGCTATATTGACAGGTGCTGAGTTCCAAGCTAGTGATCTGGGCCTACTTGTGGAAAACACTTCAGTTGAACAGCTTGGTTTTGCTCGGAAATTGACCATCTCCAAGGATTCAACCACTATCATTGCTGATGCTGCGTCAAAGGATGAATTGCAAGCCCGGGTTGCACAGTTAAAGAAGGAGTTGTCAGAGACAGACTCAGTTTATGATTCAGAGAAACTGGCTGAGAGGATTGCTAAGTTATCTGGTGGAGTTGCAGTCATCAAGGTGGGTGCTGCTACAGAGACCGAACTTGAGGATCGTAAGCTCCGTATTGAGGATGCTAAGAATGCAACATTTGCTGCCATTGAGGAAGGCATTGTTCCTGGTGGAGGTACTGCATTGGTTCATCTGTCTGCTTATGTCCCAGCAATCAAGGAAACGATTGAAGATCCAGAAGAGAGGCTAGGAGCCGACATTGTGCAAAAGGCATTGGTAGCACCTGCATCATTGATTGCTCAAAATGCTGGAATTGAAGGTGAAGTTGTTGTAGAGAAAATAAGGAATGGTGAATGGGAATTTGGTTACAATGCCATGACAGACAAGTATGAGAATTTAGTGGAGGCTGGAGTAATTGACCCTGCCAAGGTAACAAGGTGTGCTTTGCAGAATGCTGCTTCAGTTGCTGGAATGGTCTTGACCACTCAGGCCATTGTGGTGGAAAAGCCTAAGCCTAGGGCACCTGTGGCTGGTGAGCCACAAGGCCTTACTGTTTGA 1761 0.4469 MASANALSSASILRSPKQQSLSRKVNQSGNGRVNYRQQNNRFCVKASAKDIAFDQRSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGNPRVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSIKKGIDKTVQGLVAELEKKARPVKGGDDIKAVATISAGNDELIGKMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGFARKLTISKDSTTIIADAASKDELQARVAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAYVPAIKETIEDPEERLGADIVQKALVAPASLIAQNAGIEGEVVVEKIRNGEWEFGYNAMTDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPRAPVAGEPQGLTV* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1653 586 Gene3D GroEL 236 417 IPR027409 -
Lan8g1653 586 Gene3D - 181 454 IPR027410 -
Lan8g1653 586 Coils Coil 383 403 - -
Lan8g1653 586 Hamap Chaperonin GroEL [groEL]. 47 584 IPR001844 GO:0042026|GO:0140662
Lan8g1653 586 CDD GroEL 49 569 IPR001844 GO:0042026|GO:0140662
Lan8g1653 586 SUPERFAMILY GroEL-intermediate domain like 181 246 IPR027410 -
Lan8g1653 586 Gene3D - 51 568 IPR027413 -
Lan8g1653 586 ProSitePatterns Chaperonins cpn60 signature. 449 460 IPR018370 GO:0005524|GO:0006457
Lan8g1653 586 SUPERFAMILY GroEL equatorial domain-like 52 567 IPR027413 -
Lan8g1653 586 MobiDBLite consensus disorder prediction 1 36 - -
Lan8g1653 586 PRINTS 60kDa chaperonin signature 72 98 IPR001844 GO:0042026|GO:0140662
Lan8g1653 586 PRINTS 60kDa chaperonin signature 127 154 IPR001844 GO:0042026|GO:0140662
Lan8g1653 586 PRINTS 60kDa chaperonin signature 312 335 IPR001844 GO:0042026|GO:0140662
Lan8g1653 586 PRINTS 60kDa chaperonin signature 394 419 IPR001844 GO:0042026|GO:0140662
Lan8g1653 586 PRINTS 60kDa chaperonin signature 442 463 IPR001844 GO:0042026|GO:0140662
Lan8g1653 586 SUPERFAMILY GroEL apical domain-like 228 420 IPR027409 -
Lan8g1653 586 Pfam TCP-1/cpn60 chaperonin family 68 571 IPR002423 GO:0005524
Lan8g1653 586 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 584 - -
Lan8g1653 586 TIGRFAM GroEL: chaperonin GroL 48 572 IPR001844 GO:0042026|GO:0140662
Lan8g1653 586 PANTHER BNAA04G16190D PROTEIN 1 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1653 Lan-Chr8 23496059 23500129 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1653 - - gmx:100775463 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1653 8 23496059 23500129 Lan13g0395 13 2690006 2693347 LSH