Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1584 ATGGCAACAATTTCTTCAGCCGCAGCTGCTTTAAGAAGGCTTGAAGGAAAGGTGGCTCTAATCACTGGTGGTGCTAGCGGCATAGGTGAAGCCACTGCAAGACTCTTCTCAAAGCATGGAGCTAAAGTTGTTATAGCTGATACCCAAGATAACTTGGGTCAATCTGTTTGCAAAGACTTGTTGGAACAATCATCAAACGCTTCCTTTGTCCATTGCGATGTGACAAAAGAAAACGATGTTGAAAACGCTGTGAACACAGCCGTTTCCAAACATGGTAAACTAGACATCATGTTTAACAACGCTGGTATAACCGGTGTGAACAAAACCAGCATAGTTGAGAACACATTAGCTGAGTTTAAGGAAGTAATAGATGTTAACTTGGTTGGTGTTTTTCTTGGATTAAAACATGCTGCAAGGGTCATGATCCCTGCTAGAAGTGGAAGCATAATTAACACAGCTAGTGTTTGTGGATCCATAGGTGGTGTAGCTTCACATGCTTACACAAGTTCCAAGCATGGTGTTGTGGGGTTAATGAAAAATGCAGCGGTGGAGCTTGGGCCATATGGTATTAGGGTAAATAGTGTGTCACCTTATGTTGTTGCAACACCTTTGGCTAAGAACTTCTTTAAGCTTGATGATGAAGGTTGTCTTTCGGTTTATTCTAACCTGAAAGGTACAAGTCTTGTGCCAAAGGATGTGGCTGAAGCTGCTCTTTACTTGGCAAGTGATGAATCCAAGTATGTTAGTAGTCATAACCTTGTGATAGATGGAGGGTTCACATCGGTAAACCCTGGATTTTGTGTCTTTGGACAGTCCTTGTCAAACTAG 828 0.4215 MATISSAAAALRRLEGKVALITGGASGIGEATARLFSKHGAKVVIADTQDNLGQSVCKDLLEQSSNASFVHCDVTKENDVENAVNTAVSKHGKLDIMFNNAGITGVNKTSIVENTLAEFKEVIDVNLVGVFLGLKHAARVMIPARSGSIINTASVCGSIGGVASHAYTSSKHGVVGLMKNAAVELGPYGIRVNSVSPYVVATPLAKNFFKLDDEGCLSVYSNLKGTSLVPKDVAEAALYLASDESKYVSSHNLVIDGGFTSVNPGFCVFGQSLSN* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1584 275 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
Lan8g1584 275 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 266 - -
Lan8g1584 275 PANTHER MOMILACTONE A SYNTHASE 7 266 - -
Lan8g1584 275 Pfam Enoyl-(Acyl carrier protein) reductase 23 260 - -
Lan8g1584 275 Gene3D - 3 271 - -
Lan8g1584 275 CDD secoisolariciresinol-DH_like_SDR_c 13 260 IPR045309 GO:0016616
Lan8g1584 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 261 IPR036291 -
Lan8g1584 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Lan8g1584 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Lan8g1584 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Lan8g1584 275 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Lan8g1584 275 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Lan8g1584 275 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Lan8g1584 275 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Lan8g1584 275 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Lan8g1584 275 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1584 Lan-Chr8 22880959 22881942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1584 2 259 Acyl Lipid Metabolism Gene Families AT1G24360 32.308 1.61e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1584 - - gmx:100782627 431.795