Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1365 ATGAGAAGCATTAATTCAAAGACAACATACTTCACTTTCATTGTTATAGTACTAGTTGCAGTTCATGCTGAAGGACGTGCCCTTGGTATAAGTGCTACTGAGTTGGTTTCTGATGGAGTTAATGATATTCAAAGTGAAAATTCTCACCTGCATCTCAAAGGGAGTGAGCCATGTGAGAATATATGTGAGCAAATGTATGGTTTCTTGCCATGTTCCACTAACATTTTGGGTCATCTCTTTCTGATATTGGTATATGAGTACTTGTTATTCCATGGAGAGTCATACATGGCTGCTGGAAGTGAGAAGATCTTCGAGATTCTTGGCCCTGGCATTTTTGGTTCTAGTGCCTTTGATCTCCTTCGTGCCCTTCCTGAATCTCTCATTCTTCTTGTTACTGGACTCAACAGTGATAAAAAGAGTGCACAAGAGTATGCTTCCAGTGGCGTTGGATTGTTGGCTGGATCTTCCATTTTGCTTCTGACAGTAGTTTGGGGAACCTGTGTTATCATTGGAAGTCAAAATTTGAATGATGATCATAATCCTAGTGGATCTAACAGATCAAAGTTATCAATAAAAGAATCACTGACTGGTTCTGGCCTTACCATGGATATAGACACAGTGAATATGTCAAGAATCATGGTTTTCTCAATTATACCACTCCTTATAATGCAGATTCCTACTTTATTCAACCTCTCTTCCACACCTCGAGCTGTGACCTTGATGGTTTCTCTGATCATTGCTGTCATTTTTCTCATCTCCTACTTCGTATATCAGGTTTTTGAACCTCATATAGAGAAGAGAAGGCTAGAATATATCAAACATGATCATTTAATATTAAGGATTTTCCAACATGTCAACAAGCAAACTCTTCAAAAGATCCTCGCTGAGGATGGAAGTGCTAATGTTGCAGCCATAAATGGTCTATATCATGAAATAAGTGGTGGGGAGGACTTGTTAGCTTCTGACATTAAAGAGATGCTGCTTCAGAACAAAGAAAATGTAGTAAACATCAAAGAGGAACAAATAGCAGACTTGTTAAGAATTTTCGACCGAAATGGCGACCAAGTAATATCTAGGGAAGAATTTGTGGATGGTTTAACAAATTATATTAACCAAACAAAGCGTGCCCTGGAGAAAAAGTACATCGCAAAAGAATCAATGAATAAGTTGTATAAGTCATTTATCAAGCCATGGATTGAACACACTAGAAGAGAGCTTAAATTGAAGGGACATATTATATCTCAAGTGTTAAACCATGCTCAGACTGATAGGGTTGGAAGTCTTTGTAAAGATGATGGCACACCTGATGAAGATGCAATCAGAAGATTATTTCAGCAAGTTGATAGCGATGGTGATGGTCACGCCTCAAAATCAGAGTTAAAAATATTAGTCAAGGACATTAATCTTGGTGAGGTTGCAGATTCAGATGAGGCAGTTGCAAAAATCATTCATGAACTTGACCTTAACGGAGATGATGAAATCAGTGAGAATGAATTCGTTGAAGTGTTTACAAATTGGATAAATAGAAATTCCAGTAAAGCTCCTCACTTAGTACCCATGCCTCATGAAAATCAAGCCTGGGAAGAAGTTGAAACCGTGGTAGAAGATAAGAGAATCAAAGGAATAAAAGCTTGGTTGGGCGCTATAGGATATGTGATACTGGGAATTACTATGTTATCTCTTCTTGCAGAGCCCTTAGTGCATAATGTCCAAAACTTCTCTGAAAAAGCAGGAATCTCATCTTTTTTCATTTCATTTATTATTGTTCCCATTGCTACAAATTTTAGAGAAGCAACAACAGCAATAAGAGAAGCTAGCCAGAAGAAGAGAGGCAATACCTCTCAAACAATTTATGAGATTTATGAATCAGTTTTCATGAACAATATTCTTGGCTTTGTGGTGATCTCCAGTCTAATATATATGAGAAATATCACTTGGGAATTCTCAGCTGATGTATTGATTGTGGCAATTGTATGTGTTGTGATGGGCGTCTCTGTGAGTTTTCGCTCCACTTTCCCTCTCTGGACATCTTTTCCTGCATATGCAATGTACCTTCTATCATTAGTTTTGATTTTTGTTCTCAAAGATATTCTGCATTATGTTTAG 2106 0.3756 MRSINSKTTYFTFIVIVLVAVHAEGRALGISATELVSDGVNDIQSENSHLHLKGSEPCENICEQMYGFLPCSTNILGHLFLILVYEYLLFHGESYMAAGSEKIFEILGPGIFGSSAFDLLRALPESLILLVTGLNSDKKSAQEYASSGVGLLAGSSILLLTVVWGTCVIIGSQNLNDDHNPSGSNRSKLSIKESLTGSGLTMDIDTVNMSRIMVFSIIPLLIMQIPTLFNLSSTPRAVTLMVSLIIAVIFLISYFVYQVFEPHIEKRRLEYIKHDHLILRIFQHVNKQTLQKILAEDGSANVAAINGLYHEISGGEDLLASDIKEMLLQNKENVVNIKEEQIADLLRIFDRNGDQVISREEFVDGLTNYINQTKRALEKKYIAKESMNKLYKSFIKPWIEHTRRELKLKGHIISQVLNHAQTDRVGSLCKDDGTPDEDAIRRLFQQVDSDGDGHASKSELKILVKDINLGEVADSDEAVAKIIHELDLNGDDEISENEFVEVFTNWINRNSSKAPHLVPMPHENQAWEEVETVVEDKRIKGIKAWLGAIGYVILGITMLSLLAEPLVHNVQNFSEKAGISSFFISFIIVPIATNFREATTAIREASQKKRGNTSQTIYEIYESVFMNNILGFVVISSLIYMRNITWEFSADVLIVAIVCVVMGVSVSFRSTFPLWTSFPAYAMYLLSLVLIFVLKDILHYV* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1365 701 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Lan8g1365 701 Gene3D - 379 518 - -
Lan8g1365 701 ProSiteProfiles EF-hand calcium-binding domain profile. 337 372 IPR002048 GO:0005509
Lan8g1365 701 Pfam Sodium/calcium exchanger protein 109 259 IPR004837 GO:0016021|GO:0055085
Lan8g1365 701 Pfam Sodium/calcium exchanger protein 549 692 IPR004837 GO:0016021|GO:0055085
Lan8g1365 701 SMART efh_1 341 369 IPR002048 GO:0005509
Lan8g1365 701 SMART efh_1 478 506 IPR002048 GO:0005509
Lan8g1365 701 SMART efh_1 439 467 IPR002048 GO:0005509
Lan8g1365 701 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 543 699 - -
Lan8g1365 701 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 11 384 - -
Lan8g1365 701 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 394 512 - -
Lan8g1365 701 CDD EFh 440 504 IPR002048 GO:0005509
Lan8g1365 701 Gene3D - 299 378 - -
Lan8g1365 701 SUPERFAMILY EF-hand 335 504 IPR011992 -
Lan8g1365 701 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Lan8g1365 701 ProSitePatterns EF-hand calcium-binding domain. 350 362 IPR018247 -
Lan8g1365 701 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Lan8g1365 701 Coils Coil 328 348 - -
Lan8g1365 701 Pfam EF-hand domain pair 438 503 IPR002048 GO:0005509
Lan8g1365 701 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 11 384 - -
Lan8g1365 701 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 394 512 - -
Lan8g1365 701 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 543 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1365 Lan-Chr8 20493279 20504876 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1365 390 694 EF-hand Containing Proteins AT1G53210 37.994 5.89e-60 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1365 - - gmx:100799062 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1365 8 20493279 20504876 Lan8g1365 8 20493279 20504876 ECH