Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1364 ATGAGAAACATTTCAAAGACAACATACTTCACTTTCATTCTTATAGTACTAGTTGCAGTTCATGCTGAGGGGCGTGCCCTTGGTATAAGAACTACTGAGTTAGTTTCTGATGGAGTGGATGATATTCAAAGTGAATATTCTCTCCTGCATCTCACAGGGAGTGAGCCATCTGAGGAGTACTGCGAGCAAATGTATGGTTTCTTGCCATGTTCCACTAACATTTTAGGTCATCTTTTTCTGATTTTGGTATATGAGTACTTGTTATTCCATGGAGAATCTTACTTGGCTGCTGGAGGTGAAAAGATCTTTGAGATTCTTGGCCCTGGCATTTTTGGTTCTAGTGCCTTTGATCTCCTTGGTGCCCTTCCTGAGTCTCTAATTCTTCTTGTTACTGGACTCAACAGTGATAAAGAGAGTGCACAAGAGTATGCTTCCAGTGGCGTTGGATTGTTGGCTGGATCTTCCATTTTGCTTCTGACAGTAGTTTGGGGAACCTGTGTTATCATTGGAAGTCAAAATTTGAATGATGACCATAATCCTAGTGGATCTAAAAGACCAAAATTATCAATAAAAGAATCACTGACTGGTTCTGGCCTGATCATGGATATAGACACAGTGAATATGTCAAGAATCATGGTCCTCTCAATTATACCACTCCTTATAATGCAGATTCCCACTTTATTCAACCTCTCTTCTACACTTAGAGCTCTGGCCTTGATGCTTTCTCTTACCATTGCTGTCATTTTTCTCATCTCCTACTTCATATATCAGGTATTTGAACCTCATATAGAGAAGGCAAGACTAGAGTATATTAAACATGATCATTTAATATTAAGGATATTCCAACATGTTAACAAGCAAACTCTTCAAAAGATCCTTGCTGAGGATGGAACTGCTAATGTTGCAGCAATAGATGGTCTATATCAAGAAATAAGTCGTGGGGAGGACTTGTTAGCTTCTGACATTAAAGAGATGCTGCTTCGGAACAAAGAAAATATGGTAAACATCACAGAGGAACAAATTGCAGGCGTGTTGAAAATTTTCGACCGAAATGGCGACCAAGTAATATCTAGGGAAGAATTTGTGGATGGCTTAACAAATTATATTAACCAAACAAAGCGTGCTTTGGAGAGGAAGTACATCGCAAAAGAATCAATGAACAACTTGTATAAATCATTTGTGAAGCCATGGATTGAACACACAAGAAGAGAGCGTAAATTAAAGGAACATATTATAGCTGAAGTGTTAAACCGTGCTCAGATTGATATGGTTGGAAATCTTTGTAAAGAGGATGGCACACCTGATGAAGCTGCAATCAGAAGATTATTTCATCGAGTTGATATCGATGGTGACGGTCATGTCTCTAAATCAGAGTTAAAAATATTAGTCAGGAACATTAATCTTGGTGAGGTTGCAAATTCAGAGGAGGCAGTTACAAAAATCATTCATGAACTTGACCTTAACAGGGATGATCAAATCAGTGAGAATGAATTCGTTGAAGTGTTTACAAATTGGACAAACAGAAATTCCATTAATGCTCCTCACTTACTACCCGTGCATCATGAAAATCAAGCCTGGGAAGAAGTTGAAACCGTGGTAGAAGATAAGCGAATCAAAGGAATAAAAGCTTGGTTAGGCGCTTTAGGATATGTGATACTGGGAATTACTATGTTATCTCTTCTTGCAGAACCCTTAGTACATAGTGTCCAAAACTTCTCTGAAAAAGCAGGAATCTCATCGTTTTTCATCTCATTTATTATTGTCCCCATTGCTACAAATTTTAGAGAAGCAACAACAGCAATAAGAGAAGCTAGCCATAAGAAGAGAGGCAATACCTCTCAAACAATTTATGAGATTTATGGATCAGTTTTCATGAACAATATTCTTGGTTTTGTGGTGATCTCCAGTCTAATATATATGAGAAATATCACTTGGGAATTCTCAGCTGATGTATTGGTTGTGGCAATTGTATGTACTGTGATGGGTGTCTCTGCAAGTTTTCGCTCCACTTTCCCTCTCTGGACATCTTTTCCTGCATATGCAATGTACCTTCTATCATTAGTTTTGATTTTTGTTCTTAAAGATGTTCTGCATTATGTTTAG 2103 0.379 MRNISKTTYFTFILIVLVAVHAEGRALGIRTTELVSDGVDDIQSEYSLLHLTGSEPSEEYCEQMYGFLPCSTNILGHLFLILVYEYLLFHGESYLAAGGEKIFEILGPGIFGSSAFDLLGALPESLILLVTGLNSDKESAQEYASSGVGLLAGSSILLLTVVWGTCVIIGSQNLNDDHNPSGSKRPKLSIKESLTGSGLIMDIDTVNMSRIMVLSIIPLLIMQIPTLFNLSSTLRALALMLSLTIAVIFLISYFIYQVFEPHIEKARLEYIKHDHLILRIFQHVNKQTLQKILAEDGTANVAAIDGLYQEISRGEDLLASDIKEMLLRNKENMVNITEEQIAGVLKIFDRNGDQVISREEFVDGLTNYINQTKRALERKYIAKESMNNLYKSFVKPWIEHTRRERKLKEHIIAEVLNRAQIDMVGNLCKEDGTPDEAAIRRLFHRVDIDGDGHVSKSELKILVRNINLGEVANSEEAVTKIIHELDLNRDDQISENEFVEVFTNWTNRNSINAPHLLPVHHENQAWEEVETVVEDKRIKGIKAWLGALGYVILGITMLSLLAEPLVHSVQNFSEKAGISSFFISFIIVPIATNFREATTAIREASHKKRGNTSQTIYEIYGSVFMNNILGFVVISSLIYMRNITWEFSADVLVVAIVCTVMGVSASFRSTFPLWTSFPAYAMYLLSLVLIFVLKDVLHYV* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1364 700 Pfam EF-hand domain pair 437 502 IPR002048 GO:0005509
Lan8g1364 700 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Lan8g1364 700 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Lan8g1364 700 Gene3D - 376 514 - -
Lan8g1364 700 SUPERFAMILY EF-hand 332 504 IPR011992 -
Lan8g1364 700 Gene3D - 315 375 - -
Lan8g1364 700 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 9 383 - -
Lan8g1364 700 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 393 509 - -
Lan8g1364 700 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 540 698 - -
Lan8g1364 700 Gene3D - 534 694 IPR044880 -
Lan8g1364 700 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Lan8g1364 700 CDD EFh 439 503 IPR002048 GO:0005509
Lan8g1364 700 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 383 - -
Lan8g1364 700 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 540 698 - -
Lan8g1364 700 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 393 509 - -
Lan8g1364 700 ProSiteProfiles EF-hand calcium-binding domain profile. 473 508 IPR002048 GO:0005509
Lan8g1364 700 Pfam Sodium/calcium exchanger protein 548 691 IPR004837 GO:0016021|GO:0055085
Lan8g1364 700 ProSitePatterns EF-hand calcium-binding domain. 349 361 IPR018247 -
Lan8g1364 700 SMART efh_1 438 466 IPR002048 GO:0005509
Lan8g1364 700 SMART efh_1 477 505 IPR002048 GO:0005509
Lan8g1364 700 SMART efh_1 340 368 IPR002048 GO:0005509
Lan8g1364 700 ProSiteProfiles EF-hand calcium-binding domain profile. 336 371 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1364 Lan-Chr8 20479427 20487020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1364 389 693 EF-hand Containing Proteins AT1G53210 37.994 3.74e-58 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1364 - - gmx:100799062 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1364 8 20479427 20487020 Lan8g1364 8 20479427 20487020 ECH