Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1353 ATGGCCAACAGTAACCTTCCTCGAAGAATCATCAAAGAAACGCAGCGTCTTCTCAGTGAGCCAGCACCTGGAATTAGTGCTTCCCCTTCAGAAGATAATATGCGATATTTCAATGTGATGATCCTTGGACCAACCCAGTCACCTTATGAAGGAGGAGTTTTCAAGTTAGAACTATTTTTGCCCGAAGAATATCCAATGGCTGCTCCAAAGGTCAGGTTTCTGACAAAAATATATCATCCGAACATCGATAAGCTTGGTAGGATATGTCTTGATATTCTGAAAGATAAATGGAGCCCTGCCCTTCAGATACGCACTGTTCTTTTGAGCATTCAAGCTCTGTTGAGTGCACCAAACCCGGATGATCCACTTTCTGAGAACATTGCCAAGCATTGGAAATCTAATGAGGTCGAGGCTGTTGAAACAGCCAAGGAATGGACCCGATTGTATGCTAGCGGGGCTTGA 462 0.4416 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEVEAVETAKEWTRLYASGA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1353 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Lan8g1353 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 - -
Lan8g1353 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Lan8g1353 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Lan8g1353 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 150 - -
Lan8g1353 153 SMART ubc_7 8 151 - -
Lan8g1353 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Lan8g1353 153 CDD UBCc 7 146 IPR000608 -
Lan8g1353 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1353 Lan-Chr8 20334112 20339641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1353 8 118 Miscellaneous Gene Families AT3G17000 29.060 1.17e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1353 K10580 - sly:101266538 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1353 8 20334112 20339641 Lan8g1353 8 20334112 20339641 ECH
Lan7g0621 7 4882051 4886358 Lan8g1353 8 20334112 20339641 LSH
Lan8g1353 8 20334112 20339641 Lan13g0598 13 4832626 4837814 LSH
Lan19g0138 19 1209014 1213070 Lan8g1353 8 20334112 20339641 PCT
Lan5g0884 5 21841952 21845844 Lan8g1353 8 20334112 20339641 PCT
Lan8g1353 8 20334112 20339641 Lan19g0138 19 1209014 1213070 PCT
Lan8g1353 8 20334112 20339641 Lan5g0884 5 21841952 21845844 PCT